CDisplaySeqalign::SAlignTemplates Struct Reference

Search Toolkit Book for CDisplaySeqalign::SAlignTemplates

#include <objtools/align_format/showalign.hpp>

Public Attributes
string	alignHeaderTmpl
	Template for displaying header,deflines and gene info - BLAST_ALIGN_HEADER. More...
string	sortInfoTmpl
	Template for displaying Sort by header - SORT_ALIGNS_SEQ. More...
string	alnDefLineTmpl
	Template for displaying one defline ALN_DEFLINE_ROW. More...
string	alnTitlesLinkTmpl
	Template for displaying link for more defline titles. More...
string	alnTitlesTmpl
	Template for displaying multiple defline titles. More...
string	alnSeqInfoTmpl
	Template for displaying sequnce link in defline. More...
string	alignInfoTmpl
	Template for displaying singe align params - BLAST_ALIGN_PARAMS_NUC,BLAST_ALIGN_PARAMS_PROT. More...
string	alignInfoFrameTmpl
	Template for displaying frame data ALIGN_PARAMS_FRAME, part of BLAST_ALIGN_PARAMS. More...
string	alignInfoMethodTmpl
	Template for displaying frame data ALIGN_PARAMS_METHOD, part of BLAST_ALIGN_PARAMS. More...
string	alignFeatureTmpl
	Template for displaying align features -ALN_FEATURES. More...
string	alignFeatureLinkTmpl
	Template for displaying align features link -ALN_FEATURES_LINK. More...
string	alignRowTmpl
	Template for displayin actual pairwise alignment - BLAST_ALIGN_ROWS. More...
string	alignRowTmplLast
	Template for displayin actual last pairwise alignment - BLAST_ALIGN_ROWS_LST. More...
string	alignQueryAnchTempl
	Template for displaying one set of query anchored alignment - BLAST_QUERY_ANCH_NAV. More...

Detailed Description

Definition at line 259 of file showalign.hpp.

Member Data Documentation

alignFeatureLinkTmpl

string CDisplaySeqalign::SAlignTemplates::alignFeatureLinkTmpl

Template for displaying align features link -ALN_FEATURES_LINK.

Definition at line 270 of file showalign.hpp.

Referenced by CDisplaySeqalign::x_FormatOneDynamicFeature(), and CBlastFormat::x_InitAlignTemplates().

alignFeatureTmpl

string CDisplaySeqalign::SAlignTemplates::alignFeatureTmpl

Template for displaying align features -ALN_FEATURES.

Definition at line 269 of file showalign.hpp.

Referenced by CDisplaySeqalign::x_FormatOneDynamicFeature(), and CBlastFormat::x_InitAlignTemplates().

alignHeaderTmpl

string CDisplaySeqalign::SAlignTemplates::alignHeaderTmpl

Template for displaying header,deflines and gene info - BLAST_ALIGN_HEADER.

Definition at line 260 of file showalign.hpp.

Referenced by CDisplaySeqalign::x_FormatDefLinesHeader(), and CBlastFormat::x_InitAlignTemplates().

alignInfoFrameTmpl

string CDisplaySeqalign::SAlignTemplates::alignInfoFrameTmpl

Template for displaying frame data ALIGN_PARAMS_FRAME, part of BLAST_ALIGN_PARAMS.

Definition at line 267 of file showalign.hpp.

Referenced by CDisplaySeqalign::x_FormatIdentityInfo().

alignInfoMethodTmpl

string CDisplaySeqalign::SAlignTemplates::alignInfoMethodTmpl

Template for displaying frame data ALIGN_PARAMS_METHOD, part of BLAST_ALIGN_PARAMS.

Definition at line 268 of file showalign.hpp.

Referenced by CDisplaySeqalign::x_FormatAlnBlastInfo().

alignInfoTmpl

string CDisplaySeqalign::SAlignTemplates::alignInfoTmpl

Template for displaying singe align params - BLAST_ALIGN_PARAMS_NUC,BLAST_ALIGN_PARAMS_PROT.

Definition at line 266 of file showalign.hpp.

Referenced by CDisplaySeqalign::x_FormatAlnBlastInfo(), CDisplaySeqalign::x_FormatSingleAlign(), and CBlastFormat::x_InitAlignTemplates().

alignQueryAnchTempl

string CDisplaySeqalign::SAlignTemplates::alignQueryAnchTempl

Template for displaying one set of query anchored alignment - BLAST_QUERY_ANCH_NAV.

Definition at line 273 of file showalign.hpp.

Referenced by CDisplaySeqalign::x_DisplayRowData().

alignRowTmpl

string CDisplaySeqalign::SAlignTemplates::alignRowTmpl

Template for displayin actual pairwise alignment - BLAST_ALIGN_ROWS.

Definition at line 271 of file showalign.hpp.

Referenced by CDisplaySeqalign::x_FormatSingleAlign(), and CBlastFormat::x_InitAlignTemplates().

alignRowTmplLast

string CDisplaySeqalign::SAlignTemplates::alignRowTmplLast

Template for displayin actual last pairwise alignment - BLAST_ALIGN_ROWS_LST.

Definition at line 272 of file showalign.hpp.

Referenced by CDisplaySeqalign::x_FormatSingleAlign(), and CBlastFormat::x_InitAlignTemplates().

alnDefLineTmpl

string CDisplaySeqalign::SAlignTemplates::alnDefLineTmpl

Template for displaying one defline ALN_DEFLINE_ROW.

Definition at line 262 of file showalign.hpp.

Referenced by CBlastFormat::x_InitAlignTemplates(), and CDisplaySeqalign::x_MapDefLine().

alnSeqInfoTmpl

string CDisplaySeqalign::SAlignTemplates::alnSeqInfoTmpl

Template for displaying sequnce link in defline.

Definition at line 265 of file showalign.hpp.

Referenced by CBlastFormat::x_InitAlignTemplates(), and CDisplaySeqalign::x_MapDefLine().

alnTitlesLinkTmpl

string CDisplaySeqalign::SAlignTemplates::alnTitlesLinkTmpl

Template for displaying link for more defline titles.

Definition at line 263 of file showalign.hpp.

Referenced by CBlastFormat::x_InitAlignTemplates(), and CDisplaySeqalign::x_InitDefLinesHeader().

alnTitlesTmpl

string CDisplaySeqalign::SAlignTemplates::alnTitlesTmpl

Template for displaying multiple defline titles.

Definition at line 264 of file showalign.hpp.

Referenced by CBlastFormat::x_InitAlignTemplates(), and CDisplaySeqalign::x_InitDefLinesHeader().

sortInfoTmpl

string CDisplaySeqalign::SAlignTemplates::sortInfoTmpl

Template for displaying Sort by header - SORT_ALIGNS_SEQ.

Definition at line 261 of file showalign.hpp.

Referenced by CDisplaySeqalign::x_FormatAlignSortInfo(), and CBlastFormat::x_InitAlignTemplates().

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The documentation for this struct was generated from the following file:

• include/objtools/align_format/showalign.hpp