NCBI C++ ToolKit
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CDisplaySeqalign::SAlnLinksParams Struct Reference

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Info used to contstruct seq url obtained from processing the whole seq align for particular subject sequnce. More...

#include <objtools/align_format/showalign.hpp>

+ Collaboration diagram for CDisplaySeqalign::SAlnLinksParams:

Public Member Functions

 SAlnLinksParams ()
 Constructor. More...
 

Public Attributes

string segs
 seq align segments in the format seg1start-seg1end,seg2start-seg2end, More...
 
int hspNumber
 hsp number More...
 
CRange< TSeqPos > * subjRange
 subject sequnce range More...
 
bool flip
 opposite starnds indicator More...
 

Detailed Description

Info used to contstruct seq url obtained from processing the whole seq align for particular subject sequnce.

Definition at line 558 of file showalign.hpp.

Constructor & Destructor Documentation

◆ SAlnLinksParams()

CDisplaySeqalign::SAlnLinksParams::SAlnLinksParams ( )
inline

Constructor.

Definition at line 565 of file showalign.hpp.

References flip, hspNumber, NULL, and subjRange.

Member Data Documentation

◆ flip

bool CDisplaySeqalign::SAlnLinksParams::flip

opposite starnds indicator

Definition at line 562 of file showalign.hpp.

Referenced by SAlnLinksParams().

◆ hspNumber

int CDisplaySeqalign::SAlnLinksParams::hspNumber

hsp number

Definition at line 560 of file showalign.hpp.

Referenced by SAlnLinksParams().

◆ segs

string CDisplaySeqalign::SAlnLinksParams::segs

seq align segments in the format seg1start-seg1end,seg2start-seg2end,

Definition at line 559 of file showalign.hpp.

◆ subjRange

CRange<TSeqPos>* CDisplaySeqalign::SAlnLinksParams::subjRange

subject sequnce range

Definition at line 561 of file showalign.hpp.

Referenced by SAlnLinksParams().


The documentation for this struct was generated from the following file:
Modified on Sun Jul 14 04:58:09 2024 by modify_doxy.py rev. 669887