NCBI C++ ToolKit
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Search Toolkit Book for CDisplaySeqalign::SAlnLinksParams
Info used to contstruct seq url obtained from processing the whole seq align for particular subject sequnce. More...
#include <objtools/align_format/showalign.hpp>
Public Member Functions | |
SAlnLinksParams () | |
Constructor. More... | |
Public Attributes | |
string | segs |
seq align segments in the format seg1start-seg1end,seg2start-seg2end, More... | |
int | hspNumber |
hsp number More... | |
CRange< TSeqPos > * | subjRange |
subject sequnce range More... | |
bool | flip |
opposite starnds indicator More... | |
Info used to contstruct seq url obtained from processing the whole seq align for particular subject sequnce.
Definition at line 558 of file showalign.hpp.
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inline |
bool CDisplaySeqalign::SAlnLinksParams::flip |
opposite starnds indicator
Definition at line 562 of file showalign.hpp.
Referenced by SAlnLinksParams().
int CDisplaySeqalign::SAlnLinksParams::hspNumber |
string CDisplaySeqalign::SAlnLinksParams::segs |
seq align segments in the format seg1start-seg1end,seg2start-seg2end,
Definition at line 559 of file showalign.hpp.
subject sequnce range
Definition at line 561 of file showalign.hpp.
Referenced by SAlnLinksParams().