Entry Struct Reference

Search Toolkit Book for Entry

#include "entry.h"
(Private to src/objtools/flatfile.)

Collaboration diagram for Entry:

Public Member Functions
	Entry (ParserPtr pp, const char *baseData)
	~Entry ()
SectionPtr	GetFirstSectionOfType (int type)
void	AppendSection (SectionPtr secPtr)
bool	IsAA () const
bool	xInitNidSeqId (objects::CBioseq &, int type, int dataOffset, Parser::ESource)
bool	xInitSeqInst (const unsigned char *pConvert)

Public Attributes
ParserPtr	mPp
string	mBaseData
list< SectionPtr >	mSections
CRef< objects::CSeq_entry >	mSeqEntry

Detailed Description

Definition at line 57 of file entry.h.

Constructor & Destructor Documentation

Entry()

Entry::Entry ( ParserPtr  pp, const char *  baseData  )

inline

Definition at line 60 of file entry.h.

~Entry()

Entry::~Entry ( )

inline

Definition at line 68 of file entry.h.

References mSections.

Member Function Documentation

AppendSection()

void Entry::AppendSection ( SectionPtr  secPtr )

inline

Definition at line 85 of file entry.h.

References mSections.

GetFirstSectionOfType()

SectionPtr Entry::GetFirstSectionOfType ( int  type )

inline

Definition at line 75 of file entry.h.

References mSections.

Referenced by xInitNidSeqId().

IsAA()

bool Entry::IsAA

(

void

)

const

Definition at line 145 of file entry.cpp.

References LocusCont::bp, Parser::curindx, Parser::entrylist, Indexblk::lc, mBaseData, and mPp.

xInitNidSeqId()

bool Entry::xInitNidSeqId	(	objects::CBioseq &	,
		int	type,
		int	dataOffset,
		Parser::ESource
	)

Definition at line 131 of file entry.cpp.

References GetFirstSectionOfType().

xInitSeqInst()

bool Entry::xInitSeqInst

(

const unsigned char *

pConvert

)

Definition at line 155 of file entry.cpp.

References CheckSTRAND(), CheckTPG(), Parser::curindx, Parser::entrylist, CSeq_inst_Base::eRepr_raw, CSeq_inst_Base::eRepr_virtual, Indexblk::is_mga, Indexblk::lc, mBaseData, mPp, mSeqEntry, LocusCont::strand, and LocusCont::topology.

Member Data Documentation

mBaseData

string Entry::mBaseData

Definition at line 98 of file entry.h.

Referenced by IsAA(), xGetGenBankBlocks(), and xInitSeqInst().

mPp

ParserPtr Entry::mPp

Definition at line 97 of file entry.h.

Referenced by IsAA(), and xInitSeqInst().

mSections

list<SectionPtr> Entry::mSections

Definition at line 99 of file entry.h.

Referenced by AppendSection(), GetFirstSectionOfType(), xGetGenBankBlocks(), xGetGenBankSubBlocks(), xTrackNodeType(), and ~Entry().

mSeqEntry

CRef<objects::CSeq_entry> Entry::mSeqEntry

Definition at line 100 of file entry.h.

Referenced by xInitSeqInst().

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The documentation for this struct was generated from the following files:

• src/objtools/flatfile/entry.h
• src/objtools/flatfile/entry.cpp