NCBI C++ ToolKit
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Search Toolkit Book for JumperEditsBlock
Alignment edit script for gapped alignment. More...
#include "jumper.h"
(Private to src/algo/blast/core
.)
Public Attributes | |
JumperEdit * | edits |
Int4 | num_edits |
JumperEdit* JumperEditsBlock::edits |
Definition at line 97 of file jumper.h.
Referenced by JumperEditsBlockCombine(), JumperEditsBlockDup(), JumperEditsBlockFree(), JumperEditsBlockNew(), JumperFindEdits(), MakeSplicedSeg(), s_ComputeAlignmentScore(), s_ComputeBtopAndIdentity(), s_CreateHSPForWordHit(), s_FindSpliceJunctionsForGap(), s_FindSpliceJunctionsForOverlaps(), s_GetOverlapCost(), s_MergeHSPs(), s_TestHSPRanges(), and s_TrimHSP().
Int4 JumperEditsBlock::num_edits |
Definition at line 98 of file jumper.h.
Referenced by JumperEditsBlockCombine(), JumperEditsBlockDup(), JumperEditsBlockNew(), JumperFindEdits(), MakeSplicedSeg(), s_ComputeAlignmentScore(), s_ComputeBtopAndIdentity(), s_CreateHSPForWordHit(), s_FindSpliceJunctionsForGap(), s_FindSpliceJunctionsForOverlaps(), s_GetOverlapCost(), s_MergeHSPs(), s_TestHSPRanges(), and s_TrimHSP().