RPSBackboneCell Struct Reference

Search Toolkit Book for RPSBackboneCell

structure defining one cell of the RPS lookup table More...

#include <algo/blast/core/blast_aalookup.h>

Public Attributes
Int4	num_used
	number of hits in this cell More...
Int4	entries [3]
	if the number of hits in this cell is RPS_HITS_PER_CELL or less, all hits go into this array. More...

Detailed Description

structure defining one cell of the RPS lookup table

Definition at line 337 of file blast_aalookup.h.

Member Data Documentation

entries

Int4 RPSBackboneCell::entries[3]

if the number of hits in this cell is RPS_HITS_PER_CELL or less, all hits go into this array.

Otherwise, the first hit in the list goes into element 0 of the array, and element 1 contains the byte offset into the overflow array where the list of the remaining hits begins

Definition at line 339 of file blast_aalookup.h.

Referenced by BlastRPSScanSubject().

num_used

Int4 RPSBackboneCell::num_used

number of hits in this cell

Definition at line 338 of file blast_aalookup.h.

Referenced by BlastRPSScanSubject().

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The documentation for this struct was generated from the following file:

• include/algo/blast/core/blast_aalookup.h