SAlignmentScoringModel::odds Struct Reference

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Public Member Functions
	odds (double pos_=0.0, double neg_=0.0)
void	operator+= (double x)
void	operator+= (const odds o)
double	logodds (int a=2) const
string	AsString () const

Public Attributes
double	pos
double	neg

Detailed Description

Definition at line 97 of file best_placement.cpp.

Constructor & Destructor Documentation

odds()

SAlignmentScoringModel::odds::odds ( double  pos_ = 0.0, double  neg_ = 0.0  )

inline

Definition at line 101 of file best_placement.cpp.

Member Function Documentation

AsString()

string SAlignmentScoringModel::odds::AsString ( void  ) const

inline

Definition at line 114 of file best_placement.cpp.

References neg, and pos.

Referenced by SAlignmentScoringModel::GetScore(), and logodds().

logodds()

double SAlignmentScoringModel::odds::logodds ( int  a = 2 ) const

inline

Definition at line 106 of file best_placement.cpp.

References a, AsString(), log, NCBI_USER_THROW, neg, and pos.

Referenced by SAlignmentScoringModel::GetScore().

operator+=() [1/2]

void SAlignmentScoringModel::odds::operator+= ( const odds  o )

inline

Definition at line 104 of file best_placement.cpp.

References neg, and pos.

operator+=() [2/2]

void SAlignmentScoringModel::odds::operator+= ( double  x )

inline

Definition at line 103 of file best_placement.cpp.

References fabs, neg, and pos.

Member Data Documentation

neg

double SAlignmentScoringModel::odds::neg

Definition at line 99 of file best_placement.cpp.

Referenced by AsString(), SAlignmentScoringModel::GetScore(), logodds(), operator+=(), and SAlignmentScoringModel::s_GetIdentOdds_nucSS().

pos

double SAlignmentScoringModel::odds::pos

Definition at line 99 of file best_placement.cpp.

Referenced by AsString(), logodds(), operator+=(), and SAlignmentScoringModel::s_GetIdentOdds_nucSS().

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The documentation for this struct was generated from the following file:

• src/algo/align/util/best_placement.cpp