#include <objmgr/split/annot_piece.hpp>

Collaboration diagram for SAnnotPiece:

Public Types
enum	EPieceType { empty , seq_descr , seq_annot , annot_object , seq_data , hist_assembly , bioseq }

typedef CSeqsRange::TRange	TRange

Public Member Functions
	SAnnotPiece (void)

	SAnnotPiece (const CPlaceId &place_id, const CSeq_descr_SplitInfo &descr)

	SAnnotPiece (const CPlaceId &place_id, const CSeq_annot_SplitInfo &annot)

	SAnnotPiece (const CPlaceId &place_id, const CSeq_annot_SplitInfo &annot, const CAnnotObject_SplitInfo &obj)

	SAnnotPiece (const CPlaceId &place_id, const CSeq_data_SplitInfo &data)

	SAnnotPiece (const CPlaceId &place_id, const CSeq_hist_SplitInfo &hist)

	SAnnotPiece (const CPlaceId &place_id, const CBioseq_SplitInfo &data)

	SAnnotPiece (const SAnnotPiece &base, const COneSeqRange &range)

bool	operator< (const SAnnotPiece &piece) const

bool	operator== (const SAnnotPiece &piece) const

bool	operator!= (const SAnnotPiece &piece) const

Public Attributes
CPlaceId	m_PlaceId

EPieceType	m_ObjectType

union {
const CObject * m_Object

const CSeq_descr_SplitInfo * m_Seq_descr

const CSeq_annot_SplitInfo * m_Seq_annot

const CSeq_data_SplitInfo * m_Seq_data

const CSeq_hist_SplitInfo * m_Seq_hist

const CBioseq_SplitInfo * m_Bioseq

};

const CAnnotObject_SplitInfo *	m_AnnotObject

TAnnotPriority	m_Priority

CSize	m_Size

CSeqsRange	m_Location

TRange	m_IdRange

Detailed Description

Definition at line 65 of file annot_piece.hpp.

Member Typedef Documentation

◆ TRange

typedef CSeqsRange::TRange SAnnotPiece::TRange

Definition at line 67 of file annot_piece.hpp.

Member Enumeration Documentation

◆ EPieceType

enum SAnnotPiece::EPieceType

Enumerator
empty
seq_descr
seq_annot
annot_object
seq_data
hist_assembly
bioseq

Definition at line 90 of file annot_piece.hpp.

Constructor & Destructor Documentation

◆ SAnnotPiece() [1/8]

SAnnotPiece::SAnnotPiece ( void )

Definition at line 44 of file annot_piece.cpp.

◆ SAnnotPiece() [2/8]

SAnnotPiece::SAnnotPiece	(	const CPlaceId &	place_id,
		const CSeq_descr_SplitInfo &	descr
	)

explicit

Definition at line 110 of file annot_piece.cpp.

References m_Seq_descr.

◆ SAnnotPiece() [3/8]

SAnnotPiece::SAnnotPiece	(	const CPlaceId &	place_id,
		const CSeq_annot_SplitInfo &	annot
	)

explicit

Definition at line 82 of file annot_piece.cpp.

References m_Seq_annot.

◆ SAnnotPiece() [4/8]

SAnnotPiece::SAnnotPiece	(	const CPlaceId &	place_id,
		const CSeq_annot_SplitInfo &	annot,
		const CAnnotObject_SplitInfo &	obj
	)

explicit

Definition at line 67 of file annot_piece.cpp.

References m_Seq_annot.

◆ SAnnotPiece() [5/8]

SAnnotPiece::SAnnotPiece	(	const CPlaceId &	place_id,
		const CSeq_data_SplitInfo &	data
	)

explicit

Definition at line 96 of file annot_piece.cpp.

References data, and m_Seq_data.

◆ SAnnotPiece() [6/8]

SAnnotPiece::SAnnotPiece	(	const CPlaceId &	place_id,
		const CSeq_hist_SplitInfo &	hist
	)

explicit

Definition at line 124 of file annot_piece.cpp.

References m_Seq_hist.

◆ SAnnotPiece() [7/8]

SAnnotPiece::SAnnotPiece	(	const CPlaceId &	place_id,
		const CBioseq_SplitInfo &	data
	)

explicit

Definition at line 138 of file annot_piece.cpp.

References m_Bioseq.

◆ SAnnotPiece() [8/8]

SAnnotPiece::SAnnotPiece	(	const SAnnotPiece &	base,
		const COneSeqRange &	range
	)

Definition at line 53 of file annot_piece.cpp.

References m_Object.

Member Function Documentation

◆ operator!=()

bool SAnnotPiece::operator!= ( const SAnnotPiece & piece ) const

Definition at line 198 of file annot_piece.cpp.

◆ operator<()

bool SAnnotPiece::operator< ( const SAnnotPiece & piece ) const

Definition at line 152 of file annot_piece.cpp.

References annot_object, CAnnotObject_SplitInfo::Compare(), CSeq_annot_SplitInfo::Compare(), CSeq_descr_SplitInfo::Compare(), m_AnnotObject, m_IdRange, m_Object, m_ObjectType, m_PlaceId, m_Seq_annot, m_Seq_descr, and seq_descr.

◆ operator==()

bool SAnnotPiece::operator== ( const SAnnotPiece & piece ) const

Definition at line 187 of file annot_piece.cpp.

References m_AnnotObject, m_IdRange, m_Object, m_ObjectType, and m_PlaceId.

Member Data Documentation

◆

union { ... }

◆ m_AnnotObject

const CAnnotObject_SplitInfo* SAnnotPiece::m_AnnotObject

Definition at line 110 of file annot_piece.hpp.

Referenced by SChunkInfo::Add(), operator<(), and operator==().

◆ m_Bioseq

const CBioseq_SplitInfo* SAnnotPiece::m_Bioseq

Definition at line 108 of file annot_piece.hpp.

Referenced by SChunkInfo::Add(), and SAnnotPiece().

◆ m_IdRange

TRange SAnnotPiece::m_IdRange

Definition at line 116 of file annot_piece.hpp.

Referenced by SIdAnnotPieces::Add(), operator<(), operator==(), and CBlobSplitterImpl::SplitPieces().

◆ m_Location

CSeqsRange SAnnotPiece::m_Location

Definition at line 115 of file annot_piece.hpp.

Referenced by CAnnotPieces::Add(), CAnnotPieces::CountAnnotObjects(), and CAnnotPieces::Remove().

◆ m_Object

const CObject* SAnnotPiece::m_Object

Definition at line 103 of file annot_piece.hpp.

Referenced by operator<(), operator==(), and SAnnotPiece().

◆ m_ObjectType

EPieceType SAnnotPiece::m_ObjectType

Definition at line 101 of file annot_piece.hpp.

Referenced by SChunkInfo::Add(), CAnnotPieces::CountAnnotObjects(), operator<(), and operator==().

◆ m_PlaceId

CPlaceId SAnnotPiece::m_PlaceId

Definition at line 100 of file annot_piece.hpp.

Referenced by SChunkInfo::Add(), operator<(), and operator==().

◆ m_Priority

TAnnotPriority SAnnotPiece::m_Priority

Definition at line 112 of file annot_piece.hpp.

Referenced by CBlobSplitterImpl::Add().

◆ m_Seq_annot

const CSeq_annot_SplitInfo* SAnnotPiece::m_Seq_annot

Definition at line 105 of file annot_piece.hpp.

Referenced by SChunkInfo::Add(), CAnnotPieces::CountAnnotObjects(), operator<(), and SAnnotPiece().

◆ m_Seq_data

const CSeq_data_SplitInfo* SAnnotPiece::m_Seq_data

Definition at line 106 of file annot_piece.hpp.

Referenced by SChunkInfo::Add(), and SAnnotPiece().

◆ m_Seq_descr

const CSeq_descr_SplitInfo* SAnnotPiece::m_Seq_descr

Definition at line 104 of file annot_piece.hpp.

Referenced by SChunkInfo::Add(), operator<(), and SAnnotPiece().

◆ m_Seq_hist

const CSeq_hist_SplitInfo* SAnnotPiece::m_Seq_hist

Definition at line 107 of file annot_piece.hpp.

Referenced by SChunkInfo::Add(), and SAnnotPiece().

◆ m_Size

CSize SAnnotPiece::m_Size

Definition at line 114 of file annot_piece.hpp.

Referenced by SIdAnnotPieces::Add(), SChunkInfo::Add(), SIdAnnotPieces::Remove(), and CBlobSplitterImpl::SplitPieces().

The documentation for this struct was generated from the following files:

include/objmgr/split/annot_piece.hpp
src/objmgr/split/annot_piece.cpp

Public Types

Public Member Functions

Public Attributes

Detailed Description

Member Typedef Documentation

◆ TRange

Member Enumeration Documentation

◆ EPieceType

Constructor & Destructor Documentation

◆ SAnnotPiece() [1/8]

◆ SAnnotPiece() [2/8]

◆ SAnnotPiece() [3/8]

◆ SAnnotPiece() [4/8]

◆ SAnnotPiece() [5/8]

◆ SAnnotPiece() [6/8]

◆ SAnnotPiece() [7/8]

◆ SAnnotPiece() [8/8]

Member Function Documentation

◆ operator!=()

◆ operator<()

◆ operator==()

Member Data Documentation

◆

◆ m_AnnotObject

◆ m_Bioseq

◆ m_IdRange

◆ m_Location

◆ m_Object

◆ m_ObjectType

◆ m_PlaceId

◆ m_Priority

◆ m_Seq_annot

◆ m_Seq_data

◆ m_Seq_descr

◆ m_Seq_hist

◆ m_Size