NCBI C++ ToolKit
|
Search Toolkit Book for SBlastSequence
Structure to store sequence data and its length for use in the CORE of BLAST (it's a malloc'ed array of Uint1 and its length) FIXME: do not confuse with blast_seg.c's SSequence. More...
#include "blast_setup.hpp"
(Private to src/algo/blast/api
.)
Public Member Functions | |
SBlastSequence () | |
Default constructor. More... | |
SBlastSequence (TSeqPos buf_len) | |
Allocates a sequence buffer of the specified length. More... | |
SBlastSequence (Uint1 *d, TSeqPos l) | |
Parametrized constructor. More... | |
Public Attributes | |
TAutoUint1Ptr | data |
Sequence data. More... | |
TSeqPos | length |
Length of the buffer above (not necessarily sequence length!) More... | |
Structure to store sequence data and its length for use in the CORE of BLAST (it's a malloc'ed array of Uint1 and its length) FIXME: do not confuse with blast_seg.c's SSequence.
Definition at line 62 of file blast_setup.hpp.