NCBI C++ ToolKit
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SCompressedAlphabet Struct Reference

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Scoring matrix data used for compressed protein alphabets. More...

#include <algo/blast/core/blast_stat.h>

+ Collaboration diagram for SCompressedAlphabet:

Public Attributes

Int4 compressed_alphabet_size
 letters in the compressed alphabet More...
 
SBlastScoreMatrixmatrix
 score matrix More...
 
Uint1compress_table
 translation table (AA->compressed) More...
 

Detailed Description

Scoring matrix data used for compressed protein alphabets.

Definition at line 225 of file blast_stat.h.

Member Data Documentation

◆ compress_table

Uint1* SCompressedAlphabet::compress_table

translation table (AA->compressed)

Definition at line 228 of file blast_stat.h.

Referenced by BlastCompressedAaLookupTableNew(), SCompressedAlphabetFree(), and SCompressedAlphabetNew().

◆ compressed_alphabet_size

Int4 SCompressedAlphabet::compressed_alphabet_size

letters in the compressed alphabet

Definition at line 226 of file blast_stat.h.

Referenced by s_BuildCompressedScoreMatrix(), and SCompressedAlphabetNew().

◆ matrix

SBlastScoreMatrix* SCompressedAlphabet::matrix

The documentation for this struct was generated from the following file:
Modified on Sat Apr 20 12:19:21 2024 by modify_doxy.py rev. 669887