Search Toolkit Book for SCompressedAlphabet
Scoring matrix data used for compressed protein alphabets. More...
#include <algo/blast/core/blast_stat.h>
Collaboration diagram for SCompressedAlphabet:
Public Attributes | |
| Int4 | compressed_alphabet_size |
| letters in the compressed alphabet More... | |
| SBlastScoreMatrix * | matrix |
| score matrix More... | |
| Uint1 * | compress_table |
| translation table (AA->compressed) More... | |
Detailed Description
Scoring matrix data used for compressed protein alphabets.
Definition at line 225 of file blast_stat.h.
Member Data Documentation
◆ compress_table
| Uint1* SCompressedAlphabet::compress_table |
translation table (AA->compressed)
Definition at line 228 of file blast_stat.h.
Referenced by BlastCompressedAaLookupTableNew(), SCompressedAlphabetFree(), and SCompressedAlphabetNew().
◆ compressed_alphabet_size
| Int4 SCompressedAlphabet::compressed_alphabet_size |
letters in the compressed alphabet
Definition at line 226 of file blast_stat.h.
Referenced by s_BuildCompressedScoreMatrix(), and SCompressedAlphabetNew().
◆ matrix
| SBlastScoreMatrix* SCompressedAlphabet::matrix |
score matrix
Definition at line 227 of file blast_stat.h.
Referenced by BlastCompressedAaLookupTableNew(), s_BuildCompressedScoreMatrix(), and SCompressedAlphabetFree().
The documentation for this struct was generated from the following file:
- include/algo/blast/core/blast_stat.h
