NCBI C++ ToolKit
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SGreedyOffset Struct Reference

Search Toolkit Book for SGreedyOffset

Bookkeeping structure for greedy alignment. More...

#include <algo/blast/core/greedy_align.h>

Public Attributes

Int4 insert_off
 Best offset for a path ending in an insertion. More...
 
Int4 match_off
 Best offset for a path ending in a match. More...
 
Int4 delete_off
 Best offset for a path ending in a deletion. More...
 

Detailed Description

Bookkeeping structure for greedy alignment.

When aligning two sequences, the members of this structure store the largest offset into the second sequence that leads to a high-scoring alignment for a given start point

Definition at line 58 of file greedy_align.h.

Member Data Documentation

◆ delete_off

Int4 SGreedyOffset::delete_off

Best offset for a path ending in a deletion.

Definition at line 61 of file greedy_align.h.

Referenced by BLAST_AffineGreedyAlign(), s_GetNextAffineTbackFromIndel(), and s_GetNextAffineTbackFromMatch().

◆ insert_off

Int4 SGreedyOffset::insert_off

Best offset for a path ending in an insertion.

Definition at line 59 of file greedy_align.h.

Referenced by BLAST_AffineGreedyAlign(), s_GetNextAffineTbackFromIndel(), and s_GetNextAffineTbackFromMatch().

◆ match_off

Int4 SGreedyOffset::match_off

Best offset for a path ending in a match.

Definition at line 60 of file greedy_align.h.

Referenced by BLAST_AffineGreedyAlign(), and s_GetNextAffineTbackFromMatch().


The documentation for this struct was generated from the following file:
Modified on Sun Jun 16 04:30:51 2024 by modify_doxy.py rev. 669887