SIdAnnotObjs Struct Reference

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#include <objmgr/impl/tse_info.hpp>

Public Types
typedef CRange< TSeqPos >	TRange
typedef CRangeMultimap< SAnnotObject_Index, TSeqPos >	TRangeMap
typedef vector< TRangeMap * >	TAnnotSet
typedef vector< CConstRef< CSeq_annot_SNP_Info > >	TSNPSet

Public Member Functions
	SIdAnnotObjs (void)
	~SIdAnnotObjs (void)
	SIdAnnotObjs (const SIdAnnotObjs &objs)
size_t	x_GetRangeMapCount (void) const
bool	x_RangeMapIsEmpty (size_t index) const
const TRangeMap &	x_GetRangeMap (size_t index) const
TRangeMap &	x_GetRangeMap (size_t index)
bool	x_CleanRangeMaps (void)

Public Attributes
TAnnotSet	m_AnnotSet
TSNPSet	m_SNPSet

Private Member Functions
const SIdAnnotObjs &	operator= (const SIdAnnotObjs &objs)

Detailed Description

Definition at line 97 of file tse_info.hpp.

Member Typedef Documentation

TAnnotSet

typedef vector<TRangeMap*> SIdAnnotObjs::TAnnotSet

Definition at line 105 of file tse_info.hpp.

TRange

typedef CRange<TSeqPos> SIdAnnotObjs::TRange

Definition at line 103 of file tse_info.hpp.

TRangeMap

typedef CRangeMultimap<SAnnotObject_Index, TSeqPos> SIdAnnotObjs::TRangeMap

Definition at line 104 of file tse_info.hpp.

TSNPSet

typedef vector<CConstRef<CSeq_annot_SNP_Info> > SIdAnnotObjs::TSNPSet

Definition at line 106 of file tse_info.hpp.

Constructor & Destructor Documentation

SIdAnnotObjs() [1/2]

SIdAnnotObjs::SIdAnnotObjs

(

void

)

Definition at line 67 of file tse_info.cpp.

~SIdAnnotObjs()

SIdAnnotObjs::~SIdAnnotObjs

(

void

)

Definition at line 72 of file tse_info.cpp.

References m_AnnotSet, and NON_CONST_ITERATE.

SIdAnnotObjs() [2/2]

SIdAnnotObjs::SIdAnnotObjs

(

const SIdAnnotObjs &

objs

)

Definition at line 111 of file tse_info.cpp.

References _ASSERT.

Member Function Documentation

operator=()

const SIdAnnotObjs& SIdAnnotObjs::operator= ( const SIdAnnotObjs &  objs )

private

x_CleanRangeMaps()

bool SIdAnnotObjs::x_CleanRangeMaps

(

void

)

Definition at line 94 of file tse_info.cpp.

References CRangeMapBase< Traits >::empty(), and m_AnnotSet.

Referenced by CTSE_Info::x_UnmapAnnotObject().

x_GetRangeMap() [1/2]

SIdAnnotObjs::TRangeMap & SIdAnnotObjs::x_GetRangeMap

(

size_t

index

)

Definition at line 81 of file tse_info.cpp.

References m_AnnotSet.

x_GetRangeMap() [2/2]

const TRangeMap& SIdAnnotObjs::x_GetRangeMap ( size_t  index ) const

inline

Definition at line 118 of file tse_info.hpp.

References _ASSERT, m_AnnotSet, and x_RangeMapIsEmpty().

Referenced by CSeq_annot_Finder::x_Find(), CTSE_Info::x_FindSeq_feat(), CTSE_Info::x_MapAnnotObject(), CAnnot_Collector::x_SearchRange(), and CTSE_Info::x_UnmapAnnotObject().

x_GetRangeMapCount()

size_t SIdAnnotObjs::x_GetRangeMapCount ( void  ) const

inline

Definition at line 108 of file tse_info.hpp.

References m_AnnotSet.

Referenced by x_RangeMapIsEmpty(), CAnnot_Collector::x_SearchRange(), CAnnot_Collector::x_SearchTSE2(), and CTSE_Info::x_UnmapAnnotObject().

x_RangeMapIsEmpty()

bool SIdAnnotObjs::x_RangeMapIsEmpty ( size_t  index ) const

inline

Definition at line 112 of file tse_info.hpp.

References _ASSERT, CRangeMapBase< Traits >::empty(), m_AnnotSet, and x_GetRangeMapCount().

Referenced by CSeq_annot_Finder::x_Find(), CTSE_Info::x_FindSeq_feat(), x_GetRangeMap(), CAnnot_Collector::x_SearchRange(), and CAnnot_Collector::x_SearchTSE2().

Member Data Documentation

m_AnnotSet

TAnnotSet SIdAnnotObjs::m_AnnotSet

Definition at line 127 of file tse_info.hpp.

Referenced by CAnnotType_Index::GetIndexRange(), x_CleanRangeMaps(), x_GetRangeMap(), x_GetRangeMapCount(), x_RangeMapIsEmpty(), and ~SIdAnnotObjs().

m_SNPSet

TSNPSet SIdAnnotObjs::m_SNPSet

Definition at line 128 of file tse_info.hpp.

Referenced by CAnnot_Collector::x_SearchObjects(), CTSE_Info::x_UnmapAnnotObject(), and CTSE_Info::x_UnmapSNP_Table().

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The documentation for this struct was generated from the following files:

• include/objmgr/impl/tse_info.hpp
• src/objmgr/tse_info.cpp