Search Toolkit Book for SMBSpace
Space structure for greedy alignment algorithm. More...
#include <algo/blast/core/greedy_align.h>
Collaboration diagram for SMBSpace:
Public Attributes | |
| SGreedyOffset * | space_array |
| array of bookkeeping structures More... | |
| Int4 | space_allocated |
| number of structures allocated More... | |
| Int4 | space_used |
| number of structures actually in use More... | |
| struct SMBSpace * | next |
| pointer to next structure in list More... | |
Detailed Description
Space structure for greedy alignment algorithm.
Definition at line 65 of file greedy_align.h.
Member Data Documentation
◆ next
| struct SMBSpace* SMBSpace::next |
pointer to next structure in list
Definition at line 69 of file greedy_align.h.
Referenced by MBSpaceFree(), MBSpaceNew(), s_GetMBSpace(), and s_RefreshMBSpace().
◆ space_allocated
| Int4 SMBSpace::space_allocated |
number of structures allocated
Definition at line 67 of file greedy_align.h.
Referenced by BOOST_AUTO_TEST_CASE(), MBSpaceNew(), and s_GetMBSpace().
◆ space_array
| SGreedyOffset* SMBSpace::space_array |
array of bookkeeping structures
Definition at line 66 of file greedy_align.h.
Referenced by MBSpaceFree(), MBSpaceNew(), and s_GetMBSpace().
◆ space_used
| Int4 SMBSpace::space_used |
number of structures actually in use
Definition at line 68 of file greedy_align.h.
Referenced by MBSpaceNew(), s_GetMBSpace(), and s_RefreshMBSpace().
The documentation for this struct was generated from the following file:
- include/algo/blast/core/greedy_align.h
