SMinScor Struct Reference

Search Toolkit Book for SMinScor

#include <algo/gnomon/chainer.hpp>

Public Attributes
double	m_min
double	m_i5p_penalty
double	m_i3p_penalty
double	m_cds_bonus
double	m_length_penalty
double	m_minprotfrac
double	m_endprotfrac
int	m_prot_cds_len
int	m_cds_len
double	m_utr_clip_threshold
int	m_minsupport
int	m_minsupport_mrna
int	m_minsupport_rnaseq
int	m_minlen

Detailed Description

Definition at line 48 of file chainer.hpp.

Member Data Documentation

m_cds_bonus

double SMinScor::m_cds_bonus

Definition at line 52 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

m_cds_len

int SMinScor::m_cds_len

Definition at line 57 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

m_endprotfrac

double SMinScor::m_endprotfrac

Definition at line 55 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer(), and CChain::SetConfirmedStartStopForCompleteProteins().

m_i3p_penalty

double SMinScor::m_i3p_penalty

Definition at line 51 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

m_i5p_penalty

double SMinScor::m_i5p_penalty

Definition at line 50 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

m_length_penalty

double SMinScor::m_length_penalty

Definition at line 53 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

m_min

double SMinScor::m_min

Definition at line 49 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

m_minlen

int SMinScor::m_minlen

Definition at line 62 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

m_minprotfrac

double SMinScor::m_minprotfrac

Definition at line 54 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer(), CChain::CollectTrustedmRNAsProts(), and CChain::SetConfirmedStartStopForCompleteProteins().

m_minsupport

int SMinScor::m_minsupport

Definition at line 59 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer(), and GoodSupportForIntrons().

m_minsupport_mrna

int SMinScor::m_minsupport_mrna

Definition at line 60 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer(), and GoodSupportForIntrons().

m_minsupport_rnaseq

int SMinScor::m_minsupport_rnaseq

Definition at line 61 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer(), and GoodSupportForIntrons().

m_prot_cds_len

int SMinScor::m_prot_cds_len

Definition at line 56 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

m_utr_clip_threshold

double SMinScor::m_utr_clip_threshold

Definition at line 58 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

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The documentation for this struct was generated from the following file:

• include/algo/gnomon/chainer.hpp