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SMinScor Struct Reference

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#include <algo/gnomon/chainer.hpp>

Public Attributes

double m_min
 
double m_i5p_penalty
 
double m_i3p_penalty
 
double m_cds_bonus
 
double m_length_penalty
 
double m_minprotfrac
 
double m_endprotfrac
 
int m_prot_cds_len
 
int m_cds_len
 
double m_utr_clip_threshold
 
int m_minsupport
 
int m_minsupport_mrna
 
int m_minsupport_rnaseq
 
int m_minlen
 

Detailed Description

Definition at line 48 of file chainer.hpp.

Member Data Documentation

◆ m_cds_bonus

double SMinScor::m_cds_bonus

Definition at line 52 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

◆ m_cds_len

int SMinScor::m_cds_len

Definition at line 57 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

◆ m_endprotfrac

double SMinScor::m_endprotfrac

◆ m_i3p_penalty

double SMinScor::m_i3p_penalty

Definition at line 51 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

◆ m_i5p_penalty

double SMinScor::m_i5p_penalty

Definition at line 50 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

◆ m_length_penalty

double SMinScor::m_length_penalty

Definition at line 53 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

◆ m_min

double SMinScor::m_min

Definition at line 49 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

◆ m_minlen

int SMinScor::m_minlen

Definition at line 62 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

◆ m_minprotfrac

double SMinScor::m_minprotfrac

◆ m_minsupport

int SMinScor::m_minsupport

Definition at line 59 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer(), and GoodSupportForIntrons().

◆ m_minsupport_mrna

int SMinScor::m_minsupport_mrna

Definition at line 60 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer(), and GoodSupportForIntrons().

◆ m_minsupport_rnaseq

int SMinScor::m_minsupport_rnaseq

Definition at line 61 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer(), and GoodSupportForIntrons().

◆ m_prot_cds_len

int SMinScor::m_prot_cds_len

Definition at line 56 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().

◆ m_utr_clip_threshold

double SMinScor::m_utr_clip_threshold

Definition at line 58 of file chainer.hpp.

Referenced by CChainerArgUtil::ArgsToChainer().


The documentation for this struct was generated from the following file:
Modified on Wed Apr 17 13:08:53 2024 by modify_doxy.py rev. 669887