NCBI C++ ToolKit
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Search Toolkit Book for SMinScor
#include <algo/gnomon/chainer.hpp>
Public Attributes | |
double | m_min |
double | m_i5p_penalty |
double | m_i3p_penalty |
double | m_cds_bonus |
double | m_length_penalty |
double | m_minprotfrac |
double | m_endprotfrac |
int | m_prot_cds_len |
int | m_cds_len |
double | m_utr_clip_threshold |
int | m_minsupport |
int | m_minsupport_mrna |
int | m_minsupport_rnaseq |
int | m_minlen |
Definition at line 48 of file chainer.hpp.
double SMinScor::m_cds_bonus |
Definition at line 52 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer().
int SMinScor::m_cds_len |
Definition at line 57 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer().
double SMinScor::m_endprotfrac |
Definition at line 55 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer(), and CChain::SetConfirmedStartStopForCompleteProteins().
double SMinScor::m_i3p_penalty |
Definition at line 51 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer().
double SMinScor::m_i5p_penalty |
Definition at line 50 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer().
double SMinScor::m_length_penalty |
Definition at line 53 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer().
double SMinScor::m_min |
Definition at line 49 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer().
int SMinScor::m_minlen |
Definition at line 62 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer().
double SMinScor::m_minprotfrac |
Definition at line 54 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer(), CChain::CollectTrustedmRNAsProts(), and CChain::SetConfirmedStartStopForCompleteProteins().
int SMinScor::m_minsupport |
Definition at line 59 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer(), and GoodSupportForIntrons().
int SMinScor::m_minsupport_mrna |
Definition at line 60 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer(), and GoodSupportForIntrons().
int SMinScor::m_minsupport_rnaseq |
Definition at line 61 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer(), and GoodSupportForIntrons().
int SMinScor::m_prot_cds_len |
Definition at line 56 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer().
double SMinScor::m_utr_clip_threshold |
Definition at line 58 of file chainer.hpp.
Referenced by CChainerArgUtil::ArgsToChainer().