SReadQualityOptions Struct Reference

Search Toolkit Book for SReadQualityOptions

Filtering options for mapping next-generation sequences. More...

#include <algo/blast/core/blast_options.h>

Public Attributes
double	frac_ambig
	Fraction of ambiguous bases. More...
int	entropy
	Dimer entropy. More...

Detailed Description

Filtering options for mapping next-generation sequences.

Definition at line 266 of file blast_options.h.

Member Data Documentation

entropy

int SReadQualityOptions::entropy

Dimer entropy.

Definition at line 268 of file blast_options.h.

Referenced by CBlastOptionsLocal::GetReadMinDimerEntropy(), and CBlastOptionsLocal::SetReadMinDimerEntropy().

frac_ambig

double SReadQualityOptions::frac_ambig

Fraction of ambiguous bases.

Definition at line 267 of file blast_options.h.

Referenced by FilterQueriesForMapping(), CBlastOptionsLocal::GetReadMaxFractionAmbiguous(), and CBlastOptionsLocal::SetReadMaxFractionAmbiguous().

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The documentation for this struct was generated from the following file:

• include/algo/blast/core/blast_options.h