NCBI C++ ToolKit
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SSeedRoot Struct Reference

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Representation of a seed root. More...

Public Attributes

TSeqPos qoff_
 Query offset. More...
 
TSeqPos soff_
 Corresponding subject offset. More...
 
TSeqPos qstart_
 Start of the corresponding query interval. More...
 
TSeqPos qstop_
 1 + end of the corresponding query interval. More...
 

Detailed Description

Representation of a seed root.

A seed root is the initial match of Nmers found by a hash table lookup.

Definition at line 187 of file dbindex_search.cpp.

Member Data Documentation

◆ qoff_

TSeqPos SSeedRoot::qoff_

Query offset.

Definition at line 189 of file dbindex_search.cpp.

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::ProcessRoot().

◆ qstart_

TSeqPos SSeedRoot::qstart_

Start of the corresponding query interval.

Definition at line 191 of file dbindex_search.cpp.

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::ProcessRoot().

◆ qstop_

TSeqPos SSeedRoot::qstop_

1 + end of the corresponding query interval.

Definition at line 192 of file dbindex_search.cpp.

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::ProcessRoot().

◆ soff_

TSeqPos SSeedRoot::soff_

Corresponding subject offset.

Definition at line 190 of file dbindex_search.cpp.

Referenced by CSearch_Base< LEGACY, NHITS, derived_t >::ProcessRoot().


The documentation for this struct was generated from the following file:
Modified on Wed Apr 17 13:10:44 2024 by modify_doxy.py rev. 669887