NCBI C++ ToolKit
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Search Toolkit Book for SSeqRange
A structure containing two integers, used e.g. More...
#include <algo/blast/core/blast_def.h>
Public Attributes | |
Int4 | left |
left endpoint of range (zero based) More... | |
Int4 | right |
right endpoint of range (zero based) More... | |
A structure containing two integers, used e.g.
for locations for the lookup table.
Definition at line 155 of file blast_def.h.
Int4 SSeqRange::left |
left endpoint of range (zero based)
Definition at line 156 of file blast_def.h.
Referenced by _PSIAlignedBlockNew(), _PSICalculateNormalizedSequenceWeights(), _PSIComputeAlignedRegionLengths(), _PSIComputePositionExtents(), _PSIGetLeftExtents(), _PSIMsaNew(), AascanTestFixture::AascanTestFixture(), BLAST_ComplementMaskLocations(), Blast_GetSeqLocInfoVector(), Blast_MaskTheResidues(), BlastHashLookupIndexQueryExactMatches(), BlastLookupIndexQueryExactMatches(), BlastMaskLocDNAToProtein(), BlastMaskLocProteinToDNA(), BlastSeqLocCombine(), BlastSeqLocNew(), BlastSeqLocReverse(), BOOST_AUTO_TEST_CASE(), CompressedAascanTestFixture::CompressedAascanTestFixture(), EstimateNumTableEntries(), CSearch_Base< LEGACY, NHITS, derived_t >::operator()(), PHIGetPatternOccurrences(), s_AddPSSMNeighboringWords(), s_BackupSubject(), s_BlastSearchEngineCore(), s_BlastSearchEngineOneContext(), s_BlastSeqLoc2CSeqloc(), s_CompressedAddNeighboringWords(), s_effectiveObservations(), s_FillContigMBTable(), s_FillDiscMBTable(), s_FillPV(), s_GetNextSubjectChunk(), s_MaskSequence(), s_NaHashLookupFillPV(), s_SegsToBlastSeqLoc(), s_SeqLocListInvert(), s_SeqRangeSortByStartPosition(), SplitQueryBlk_GetChunkBounds(), SplitQueryBlk_SetChunkBounds(), SSeqRangeNew(), SubjectIndexNew(), and x_TestGetSeqLocInfoVector().
Int4 SSeqRange::right |
right endpoint of range (zero based)
Definition at line 157 of file blast_def.h.
Referenced by _PSIAlignedBlockNew(), _PSICalculateNormalizedSequenceWeights(), _PSIComputeAlignedRegionLengths(), _PSIComputePositionExtents(), _PSIGetRightExtents(), _PSIMsaNew(), AascanTestFixture::AascanTestFixture(), BLAST_ComplementMaskLocations(), Blast_GetSeqLocInfoVector(), Blast_MaskTheResidues(), BlastHashLookupIndexQueryExactMatches(), BlastLookupIndexQueryExactMatches(), BlastMaskLocDNAToProtein(), BlastMaskLocProteinToDNA(), BlastSeqLocCombine(), BlastSeqLocNew(), BlastSeqLocReverse(), BOOST_AUTO_TEST_CASE(), CompressedAascanTestFixture::CompressedAascanTestFixture(), EstimateNumTableEntries(), CSearch_Base< LEGACY, NHITS, derived_t >::operator()(), PHIGetPatternOccurrences(), s_AddPSSMNeighboringWords(), s_BackupSubject(), s_BlastSearchEngineCore(), s_BlastSeqLoc2CSeqloc(), s_CompressedAddNeighboringWords(), s_effectiveObservations(), s_FillContigMBTable(), s_FillDiscMBTable(), s_FillPV(), s_GetNextSubjectChunk(), s_MaskSequence(), s_NaHashLookupFillPV(), s_RestoreSubject(), s_SegsToBlastSeqLoc(), s_SeqLocListInvert(), SplitQueryBlk_GetChunkBounds(), SplitQueryBlk_SetChunkBounds(), SSeqRangeNew(), SubjectIndexNew(), and x_TestGetSeqLocInfoVector().