Search Toolkit Book for SSeqTableConverter

Collaboration diagram for SSeqTableConverter:

Public Member Functions
	SSeqTableConverter (const CSNPDbSeqIterator &it)

bool	AddToTable (const CSNPDbFeatIterator &it)

void	Add (const CSNPDbFeatIterator &it)

vector< CRef< CSeq_annot > >	GetAnnots (const string &annot_name)

Public Attributes
SSeqTableContent	m_Tables [2][kMaxTableAlleles]

CRef< CSeq_id >	m_Seq_id

CRef< CSeq_annot >	m_RegularAnnot

Detailed Description

Definition at line 1739 of file snpread.cpp.

Constructor & Destructor Documentation

◆ SSeqTableConverter()

SSeqTableConverter::SSeqTableConverter ( const CSNPDbSeqIterator & it )

Definition at line 1756 of file snpread.cpp.

Member Function Documentation

◆ Add()

void SSeqTableConverter::Add ( const CSNPDbFeatIterator & it )

inline

Definition at line 1797 of file snpread.cpp.

References AddToTable(), CSNPDbFeatIterator::GetSeq_feat(), m_RegularAnnot, CSeq_annot_Base::SetData(), and x_NewAnnot().

Referenced by CSNPDbSeqIterator::GetTableFeatAnnots().

◆ AddToTable()

bool SSeqTableConverter::AddToTable ( const CSNPDbFeatIterator & it )

inline

Definition at line 1784 of file snpread.cpp.

References SSeqTableContent::Add(), CSNPDbFeatIterator::GetExtraRange(), CSNPDbFeatIterator::GetSNPLength(), kMaxTableAlleles, m_Tables, and compile_time_bits::range().

Referenced by Add().

◆ GetAnnots()

vector< CRef< CSeq_annot > > SSeqTableConverter::GetAnnots ( const string & annot_name )

Definition at line 1763 of file snpread.cpp.

References SSeqTableContent::GetAnnot(), i, kMaxTableAlleles, m_RegularAnnot, m_Seq_id, m_Tables, and CSeq_annot::SetNameDesc().

Referenced by CSNPDbSeqIterator::GetTableFeatAnnots().

Member Data Documentation

◆ m_RegularAnnot

CRef<CSeq_annot> SSeqTableConverter::m_RegularAnnot

Definition at line 1752 of file snpread.cpp.

Referenced by Add(), and GetAnnots().

◆ m_Seq_id

CRef<CSeq_id> SSeqTableConverter::m_Seq_id

Definition at line 1751 of file snpread.cpp.

Referenced by GetAnnots().

◆ m_Tables

SSeqTableContent SSeqTableConverter::m_Tables[2][kMaxTableAlleles]

Definition at line 1745 of file snpread.cpp.

Referenced by AddToTable(), and GetAnnots().

The documentation for this struct was generated from the following file:

src/sra/readers/sra/snpread.cpp

Public Member Functions

Public Attributes