NCBI C++ ToolKit
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SValidatorContext Struct Reference

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#include <objtools/validator/validator_context.hpp>

+ Collaboration diagram for SValidatorContext:

Public Types

using TSeqIdSet = set< CConstRef< CSeq_id >, PPtrLess< CConstRef< CSeq_id > >>
 
using FIdInBlob = function< bool(const CSeq_id &id)>
 
using taxupdate_func_t = function< CRef< CTaxon3_reply >(const vector< CRef< COrg_ref > > &list)>
 

Public Attributes

bool PreprocessHugeFile {false}
 
bool PostprocessHugeFile {false}
 
bool IsPatent {false}
 
bool IsPDB {false}
 
bool IsRefSeq {false}
 
string HugeSetId
 
atomic_bool CheckECNumFileStatus {true}
 
bool NoBioSource {false}
 
bool NoPubsFound {false}
 
bool NoCitSubsFound {false}
 
bool CurrTpaAssembly {false}
 
int JustTpaAssembly {0}
 
int TpaAssemblyHist {0}
 
int TpaNoHistYesGI {0}
 
std::atomic< size_t > NumGenes {0}
 
std::atomic< size_t > NumGeneXrefs {0}
 
std::atomic< size_t > CumulativeInferenceCount {0}
 
once_flag DescriptorsOnceFlag
 
once_flag SubmitBlockOnceFlag
 
once_flag WgsSetInSeqSubmitOnceFlag
 
once_flag ClassNotSetOnceFlag
 
once_flag ProteinHaveGeneralIDOnceFlag
 
FIdInBlob IsIdInBlob {nullptr}
 
taxupdate_func_t m_taxon_update
 

Detailed Description

Definition at line 48 of file validator_context.hpp.

Member Typedef Documentation

◆ FIdInBlob

Definition at line 75 of file validator_context.hpp.

◆ taxupdate_func_t

Definition at line 77 of file validator_context.hpp.

◆ TSeqIdSet

Definition at line 50 of file validator_context.hpp.

Member Data Documentation

◆ CheckECNumFileStatus

atomic_bool SValidatorContext::CheckECNumFileStatus {true}

Definition at line 58 of file validator_context.hpp.

Referenced by CSingleFeatValidator::x_ReportECNumFileStatus().

◆ ClassNotSetOnceFlag

once_flag SValidatorContext::ClassNotSetOnceFlag

Definition at line 72 of file validator_context.hpp.

Referenced by CValidError_bioseqset::ValidateBioseqSet().

◆ CumulativeInferenceCount

std::atomic<size_t> SValidatorContext::CumulativeInferenceCount {0}

Definition at line 68 of file validator_context.hpp.

◆ CurrTpaAssembly

bool SValidatorContext::CurrTpaAssembly {false}

Definition at line 62 of file validator_context.hpp.

◆ DescriptorsOnceFlag

once_flag SValidatorContext::DescriptorsOnceFlag

Definition at line 69 of file validator_context.hpp.

Referenced by CValidError_bioseqset::ValidateBioseqSet().

◆ HugeSetId

string SValidatorContext::HugeSetId

Definition at line 57 of file validator_context.hpp.

Referenced by CValidError_imp::PostErr().

◆ IsIdInBlob

FIdInBlob SValidatorContext::IsIdInBlob {nullptr}

Definition at line 76 of file validator_context.hpp.

Referenced by CValidError_imp::IsFarSequence().

◆ IsPatent

bool SValidatorContext::IsPatent {false}

Definition at line 54 of file validator_context.hpp.

◆ IsPDB

bool SValidatorContext::IsPDB {false}

Definition at line 55 of file validator_context.hpp.

◆ IsRefSeq

bool SValidatorContext::IsRefSeq {false}

Definition at line 56 of file validator_context.hpp.

◆ JustTpaAssembly

int SValidatorContext::JustTpaAssembly {0}

Definition at line 63 of file validator_context.hpp.

◆ m_taxon_update

taxupdate_func_t SValidatorContext::m_taxon_update

Definition at line 78 of file validator_context.hpp.

◆ NoBioSource

bool SValidatorContext::NoBioSource {false}

Definition at line 59 of file validator_context.hpp.

◆ NoCitSubsFound

bool SValidatorContext::NoCitSubsFound {false}

Definition at line 61 of file validator_context.hpp.

◆ NoPubsFound

bool SValidatorContext::NoPubsFound {false}

Definition at line 60 of file validator_context.hpp.

◆ NumGenes

std::atomic<size_t> SValidatorContext::NumGenes {0}

Definition at line 66 of file validator_context.hpp.

◆ NumGeneXrefs

std::atomic<size_t> SValidatorContext::NumGeneXrefs {0}

Definition at line 67 of file validator_context.hpp.

◆ PostprocessHugeFile

bool SValidatorContext::PostprocessHugeFile {false}

Definition at line 53 of file validator_context.hpp.

Referenced by CValidError_bioseq::ValidateBioseqContext().

◆ PreprocessHugeFile

bool SValidatorContext::PreprocessHugeFile {false}

Definition at line 52 of file validator_context.hpp.

◆ ProteinHaveGeneralIDOnceFlag

once_flag SValidatorContext::ProteinHaveGeneralIDOnceFlag

Definition at line 73 of file validator_context.hpp.

◆ SubmitBlockOnceFlag

once_flag SValidatorContext::SubmitBlockOnceFlag

Definition at line 70 of file validator_context.hpp.

◆ TpaAssemblyHist

int SValidatorContext::TpaAssemblyHist {0}

Definition at line 64 of file validator_context.hpp.

◆ TpaNoHistYesGI

int SValidatorContext::TpaNoHistYesGI {0}

Definition at line 65 of file validator_context.hpp.

◆ WgsSetInSeqSubmitOnceFlag

once_flag SValidatorContext::WgsSetInSeqSubmitOnceFlag

Definition at line 71 of file validator_context.hpp.


The documentation for this struct was generated from the following file:
Modified on Sat Jun 22 10:39:28 2024 by modify_doxy.py rev. 669887