meNode Struct Reference

Search Toolkit Book for meNode

#include "graph.h"
(Private to src/algo/phy_tree/fastme.)

Collaboration diagram for meNode:

Public Attributes
char	label [50]
struct meEdge *	parentEdge
struct meEdge *	leftEdge
struct meEdge *	middleEdge
struct meEdge *	rightEdge
int	index
int	index2

Detailed Description

Definition at line 74 of file graph.h.

Member Data Documentation

index

int meNode::index

Definition at line 80 of file graph.h.

Referenced by BalWFext(), BalWFint(), BMEaddSpecies(), BMEcalcDownAverage(), BMEcalcUpAverage(), BMEtestEdge(), BMEupdateAveragesMatrix(), bNNI(), bNNIEdgeTest(), bNNIRetestEdge(), bNNIupdateAverages(), calcUpAverages(), copyNode(), fillTableUp(), GMEaddSpecies(), GMEcalcDownAverage(), GMEcalcUpAverage(), GMEupdateAveragesMatrix(), limitedFillTableUp(), makeBMEAveragesTable(), makeNode(), makeOLSAveragesTable(), NNI(), NNIEdgeTest(), NNIRetestEdge(), NNIupdateAverages(), OLSext(), OLSint(), printMatrix(), testEdge(), updatePair(), updateSubTree(), updateSubTreeAfterNNI(), updateSubTreeAverages(), WFext(), and WFint().

index2

int meNode::index2

Definition at line 81 of file graph.h.

Referenced by BMEaddSpecies(), BMEcalcDownAverage(), BMEcalcUpAverage(), compareSets(), fillTableUp(), GMEaddSpecies(), GMEcalcDownAverage(), GMEcalcUpAverage(), loadMatrix(), loadMatrixOLD(), makeBMEAveragesTable(), makeNode(), and makeOLSAveragesTable().

label

char meNode::label[50]

Definition at line 75 of file graph.h.

Referenced by BMEaddSpecies(), compareSets(), copyNode(), decodeNewickSubtree(), detrifurcate(), GMEaddSpecies(), GMEsplitEdge(), loadNewickTree(), makeNode(), NewickPrintSubtree(), NewickPrintSubtreeString(), NewickPrintTree(), NewickPrintTreeString(), and printMatrix().

leftEdge

struct meEdge* meNode::leftEdge

Definition at line 77 of file graph.h.

Referenced by assignBottomsize(), assignTopsize(), BalWFext(), BalWFint(), BMEaddSpecies(), BMEcalcDownAverage(), BMEsplitEdge(), BMEupdateAveragesMatrix(), bNNIEdgeTest(), bNNItopSwitch(), decodeNewickSubtree(), depthFirstTraverse(), detrifurcate(), fillTableUp(), freeSubTree(), freeTree(), GMEaddSpecies(), GMEcalcDownAverage(), GMEsplitEdge(), GMEupdateAveragesMatrix(), makeBMEAveragesTable(), makeNode(), makeOLSAveragesTable(), NewickPrintSubtree(), NewickPrintSubtreeString(), NewickPrintTree(), NewickPrintTreeString(), NNI(), NNIEdgeTest(), NNItopSwitch(), OLSext(), OLSint(), partitionSizes(), siblingEdge(), topFirstTraverse(), updatePair(), updateSizes(), updateSubTree(), updateSubTreeAfterNNI(), updateSubTreeAverages(), WFext(), and WFint().

middleEdge

struct meEdge* meNode::middleEdge

Definition at line 78 of file graph.h.

Referenced by decodeNewickSubtree(), detrifurcate(), and makeNode().

parentEdge

struct meEdge* meNode::parentEdge

Definition at line 76 of file graph.h.

Referenced by BalWFext(), BMEaddSpecies(), BMEcalcUpAverage(), BMEsplitEdge(), BMEtestEdge(), BMEupdateAveragesMatrix(), bNNItopSwitch(), decodeNewickSubtree(), depthFirstTraverse(), detrifurcate(), freeSubTree(), GMEaddSpecies(), GMEcalcUpAverage(), GMEsplitEdge(), GMEupdateAveragesMatrix(), makeBMEAveragesTable(), makeNode(), makeOLSAveragesTable(), NNI(), NNIEdgeTest(), NNItopSwitch(), OLSint(), testEdge(), updatePair(), updateSizes(), updateSubTree(), updateSubTreeAfterNNI(), updateSubTreeAverages(), and WFext().

rightEdge

struct meEdge* meNode::rightEdge

Definition at line 79 of file graph.h.

Referenced by assignBottomsize(), assignTopsize(), BalWFext(), BalWFint(), BMEcalcDownAverage(), BMEsplitEdge(), BMEupdateAveragesMatrix(), bNNIEdgeTest(), bNNItopSwitch(), decodeNewickSubtree(), fillTableUp(), freeSubTree(), GMEcalcDownAverage(), GMEsplitEdge(), GMEupdateAveragesMatrix(), makeBMEAveragesTable(), makeNode(), makeOLSAveragesTable(), moveRight(), NewickPrintSubtree(), NewickPrintSubtreeString(), NewickPrintTree(), NewickPrintTreeString(), NNI(), NNIEdgeTest(), NNItopSwitch(), OLSext(), OLSint(), partitionSizes(), siblingEdge(), updatePair(), updateSizes(), updateSubTree(), updateSubTreeAfterNNI(), updateSubTreeAverages(), WFext(), and WFint().

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The documentation for this struct was generated from the following file:

• src/algo/phy_tree/fastme/graph.h