#include <corelib/ncbistl.hpp>
#include <objtools/edit/gaps_edit.hpp>
#include <misc/discrepancy/discrepancy.hpp>
#include <mutex>
#include <optional>
#include "fileset.hpp"
#include "table2asn_validator.hpp"
#include <objects/seq/Seqdesc.hpp>

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Classes
class	TMultiFileSet< _enum, _options >

class	CTable2AsnContext

struct	CTable2AsnContext::SPrtAlnOptions

Namespaces
	objects

	objects::edit

Typedefs
using	CDiagnosticFileSet = TMultiFileSet< eFiles, eFiles::log, eFiles::ecn, eFiles::gbf, eFiles::val, eFiles::dr, eFiles::stats, eFiles::fixedproducts >

using	CDataFileSet = TMultiFileSet< eFiles, eFiles::asn >

Enumerations
enum class	eFiles { asn , log , ecn , gbf , val , dr , stats , fixedproducts }

Functions
void	g_LoadLinkageEvidence (const string &linkageEvidenceFilename, objects::CGapsEditor::TCountToEvidenceMap &gapsizeToEvidence, objects::ILineErrorListener *pMessageListener)

void	g_LogDiagMessage (objects::ILineErrorListener *, EDiagSev, const string &msg)

Typedef Documentation

◆ CDataFileSet

using CDataFileSet = TMultiFileSet<eFiles, eFiles::asn >

Definition at line 82 of file table2asn_context.hpp.

◆ CDiagnosticFileSet

using CDiagnosticFileSet = TMultiFileSet<eFiles, eFiles::log, eFiles::ecn, eFiles::gbf, eFiles::val, eFiles::dr, eFiles::stats, eFiles::fixedproducts >

Definition at line 71 of file table2asn_context.hpp.

Enumeration Type Documentation

◆ eFiles

enum eFiles

strong

Enumerator
asn
log
ecn
gbf
val
dr
stats
fixedproducts

Definition at line 43 of file table2asn_context.hpp.

Function Documentation

◆ g_LoadLinkageEvidence()

void g_LoadLinkageEvidence	(	const string &	linkageEvidenceFilename,
		objects::CGapsEditor::TCountToEvidenceMap &	gapsizeToEvidence,
		objects::ILineErrorListener *	pMessageListener
	)

◆ g_LogDiagMessage()

void g_LogDiagMessage	(	objects::ILineErrorListener *	,
		EDiagSev	,
		const string &	msg
	)

Classes

Namespaces

Typedefs

Enumerations

Functions