NCBI C++ ToolKit
Classes
tabular_fmt.hpp File Reference
#include <objmgr/util/sequence.hpp>
#include <objmgr/util/create_defline.hpp>
#include <objects/genomecoll/genome_collection__.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <algo/align/util/score_lookup.hpp>
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Classes

class  CTabularFormatter
 Simple tabular alignment formatter This is a replacement for the BLAST tabular formatter that supports a set of custom gpipe extensions and also provides for better performance. More...
 
class  CTabularFormatter::IFormatter
 
class  CTabularFormatter_AllSeqIds
 
class  CTabularFormatter_SeqId
 
class  CTabularFormatter_AlignStart
 
class  CTabularFormatter_AlignEnd
 
class  CTabularFormatter_AlignStrand
 
class  CTabularFormatter_SeqLength
 
class  CTabularFormatter_AlignLength
 
class  CTabularFormatter_AlignLengthUngap
 
class  CTabularFormatter_PercentId
 
class  CTabularFormatter_PercentCoverage
 
class  CTabularFormatter_GapCount
 
class  CTabularFormatter_IdentityCount
 
class  CTabularFormatter_MismatchCount
 
class  CTabularFormatter_MismatchPositions
 
class  CTabularFormatter_GapRanges
 
class  CTabularFormatter_GapBaseCount
 
class  CTabularFormatter_EValue
 
class  CTabularFormatter_EValue_Mantissa
 
class  CTabularFormatter_EValue_Exponent
 
class  CTabularFormatter_BitScore
 
class  CTabularFormatter_Score
 
class  CTabularFormatter_AnyScore
 formatter for dumping any score in an alignment More...
 
class  CTabularFormatter_AlignId
 formatter for dumping alignment identifiers More...
 
class  CTabularFormatter_BestPlacementGroup
 formatter for dumping alignment identifiers More...
 
class  CTabularFormatter_Defline
 formatter for dumping sequence deflines More...
 
class  CTabularFormatter_ProtRef
 formatter for dumping sequence Prot-refs (protein only) More...
 
class  CTabularFormatter_TaxId
 formatter for dumping tax-ids More...
 
class  CTabularFormatter_Comment
 formatter for dumping content of sequence comment descriptors More...
 
class  CTabularFormatter_OrgName
 formatter for dumping organism names More...
 
class  CTabularFormatter_ExonIntrons
 formatter for dumping exons More...
 
class  CTabularFormatter_BiggestGapBases
 
class  CTabularFormatter_SeqChrom
 
class  CTabularFormatter_SeqClone
 
class  CTabularFormatter_Tech
 
class  CTabularFormatter_DiscStrand
 
class  CTabularFormatter_FixedText
 
class  CTabularFormatter_Entropy
 formatter for Shannon's entropy More...
 
class  CTabularFormatter_SegPercent
 formatter for BLAST seg % More...
 
class  CTabularFormatter_AlignLengthRatio
 
class  CTabularFormatter_Cigar
 formatter for dumping cigar of alignments More...
 
class  CTabularFormatter_AssemblyInfo
 
class  CTabularFormatter_PatchType
 
class  CTabularFormatter_NearestGap
 
class  CTabularFormatter_Traceback
 
class  CTabularFormatter_Indels
 
class  CTabularFormatter_GeneSymbol
 
class  CTabularFormatter_StartCodonChanges
 
class  CTabularFormatter_StopCodonChanges
 
Modified on Tue Feb 27 05:54:22 2024 by modify_doxy.py rev. 669887