tbl_edit_dlg.cpp File Reference

#include <ncbi_pch.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/general/User_field.hpp>
#include <objects/seq/Seqdesc.hpp>
#include <objects/seqfeat/Seq_feat.hpp>
#include <objects/seqfeat/SeqFeatData.hpp>
#include <objmgr/bioseq_ci.hpp>
#include <objmgr/seqdesc_ci.hpp>
#include <gui/packages/pkg_sequence_edit/tbl_edit_dlg.hpp>
#include <gui/packages/pkg_sequence_edit/molinfoedit_util.hpp>
#include <gui/widgets/edit/field_type_constants.hpp>
#include <gui/packages/pkg_sequence_edit/subprep_util.hpp>
#include <gui/objutils/cmd_create_desc.hpp>
#include <gui/objutils/descriptor_change.hpp>
#include <gui/objutils/cmd_del_desc.hpp>
#include <gui/widgets/loaders/open_objects_dlg.hpp>
#include <gui/widgets/loaders/file_load_wizard.hpp>
#include <gui/utils/object_loader.hpp>
#include <gui/utils/execute_unit.hpp>
#include <gui/widgets/wx/async_call.hpp>
#include <wx/msgdlg.h>
#include <wx/stattext.h>

Include dependency graph for tbl_edit_dlg.cpp:

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Functions
	USING_SCOPE (ncbi::objects)
static int	s_FindColumn (CRef< CSeq_table > table, const string &name)
static void	x_SetAllTableStringValues (CRef< CSeq_table > table, const string &val)
CRef< CSeqTable_column >	s_GetNthColumn (CRef< CSeq_table > table, int n)
static bool	s_RemoveValueFromNote (string &note, string value)
static string	s_GetPrefixForStructuredComment (const objects::CUser_object &user)
static void	AddProblemsToColumn (CRef< objects::CSeqTable_column > val_col, CRef< CFeatureSeqTableColumnBase > rule_col, vector< string > &problems)
vector< string >	GetAssemblyDataFields ()

Variables
static const string	kUniversalPrimers = "[universal primers]"
static const string	kSpeciesSpecificPrimers = "[amplified with species-specific primers]"
static const string	kUniversalPrimersLabel = "universal primers"
static const string	kSpeciesSpecificPrimersLabel = "species-specific primers"
static const string	kPrimerType = "Primer Type"

Function Documentation

AddProblemsToColumn()

static void AddProblemsToColumn ( CRef< objects::CSeqTable_column >  val_col, CRef< CFeatureSeqTableColumnBase >  rule_col, vector< string > &  problems  )

static

Definition at line 1077 of file tbl_edit_dlg.cpp.

References CFeatureSeqTableColumnBase::IsValid(), and MergeStringVectors().

Referenced by CFeatureTableCommandConverter::MakeProblemsColumn().

GetAssemblyDataFields()

vector<string> GetAssemblyDataFields

(

)

Definition at line 1239 of file tbl_edit_dlg.cpp.

Referenced by CSubPrep_panel::ClearSeqTechValues(), CSubPrep_panel::GetSeqTechTable(), and CSubPrep_panel::OkToBulkEditSeqTech().

s_FindColumn()

static int s_FindColumn ( CRef< CSeq_table >  table, const string &  name  )

static

Definition at line 304 of file tbl_edit_dlg.cpp.

References NStr::Equal(), CSeqTable_column_info_Base::GetField_name(), CSeqTable_column_Base::GetHeader(), CSeqTable_column_info_Base::GetTitle(), i, CSeqTable_column_info_Base::IsSetField_name(), CSeqTable_column_Base::IsSetHeader(), CSeqTable_column_info_Base::IsSetTitle(), ncbi::grid::netcache::search::fields::size, and table.

Referenced by CMolInfoTableCommandConverter::GetChoices(), CFeatureTableCommandConverter::GetChoices(), CDBLinkTableCommandConverter::GetValuesTableFromSeqEntry(), and CStructuredCommentCommandConverter::GetValuesTableFromSeqEntry().

s_GetNthColumn()

CRef<CSeqTable_column> s_GetNthColumn	(	CRef< CSeq_table >	table,
		int	n
	)

Definition at line 555 of file tbl_edit_dlg.cpp.

References n, and table.

Referenced by CMolInfoTableCommandConverter::GetChoices(), CGenomeTableCommandConverter::GetChoices(), CPrimerTableCommandConverter::GetChoices(), and CFeatureTableCommandConverter::GetChoices().

s_GetPrefixForStructuredComment()

static string s_GetPrefixForStructuredComment ( const objects::CUser_object &  user )

static

Definition at line 873 of file tbl_edit_dlg.cpp.

References NStr::Equal(), and ITERATE.

Referenced by CStructuredCommentCommandConverter::ClearAllValues(), CStructuredCommentCommandConverter::GetCommandFromValuesTable(), and CStructuredCommentCommandConverter::GetValuesTableFromSeqEntry().

s_RemoveValueFromNote()

static bool s_RemoveValueFromNote ( string &  note, string  value  )

static

Definition at line 684 of file tbl_edit_dlg.cpp.

References NStr::Find(), and rapidjson::value.

Referenced by CPrimerTableCommandConverter::GetCommandFromValuesTable().

USING_SCOPE()

USING_SCOPE

(

ncbi::objects

)

x_SetAllTableStringValues()

static void x_SetAllTableStringValues ( CRef< CSeq_table >  table, const string &  val  )

static

Definition at line 323 of file tbl_edit_dlg.cpp.

References CSeqTable_column_Base::GetData(), i, CSeqTable_column_Base::IsSetData(), CSeqTable_multi_data_Base::IsString(), CSeqTable_column_Base::SetData(), ncbi::grid::netcache::search::fields::size, table, and val.

Referenced by CChimeraCommentDescriptorTableCommandConverter::ClearAllValues(), CMolInfoTableCommandConverter::ClearAllValues(), CGenomeTableCommandConverter::ClearAllValues(), and CPrimerTableCommandConverter::ClearAllValues().

Variable Documentation

kPrimerType

const string kPrimerType = "Primer Type"

static

Definition at line 682 of file tbl_edit_dlg.cpp.

Referenced by CPrimerTableCommandConverter::CheckForMixedValues(), CPrimerTableCommandConverter::GetCommandFromValuesTable(), CPrimerTableCommandConverter::GetPrimerTypeColumnName(), CPrimerTableCommandConverter::GetValuesTableFromSeqEntry(), and CPrimerTableCommandConverter::RemapColumnName().

kSpeciesSpecificPrimers

const string kSpeciesSpecificPrimers = "[amplified with species-specific primers]"

static

Definition at line 679 of file tbl_edit_dlg.cpp.

Referenced by CPrimerTableCommandConverter::GetCommandFromValuesTable(), and CPrimerTableCommandConverter::GetValuesTableFromSeqEntry().

kSpeciesSpecificPrimersLabel

const string kSpeciesSpecificPrimersLabel = "species-specific primers"

static

Definition at line 681 of file tbl_edit_dlg.cpp.

Referenced by CPrimerTableCommandConverter::CheckForMixedValues(), CPrimerTableCommandConverter::GetChoices(), CPrimerTableCommandConverter::GetCommandFromValuesTable(), and CPrimerTableCommandConverter::GetValuesTableFromSeqEntry().

kUniversalPrimers

const string kUniversalPrimers = "[universal primers]"

static

Definition at line 678 of file tbl_edit_dlg.cpp.

Referenced by CPrimerTableCommandConverter::GetCommandFromValuesTable(), and CPrimerTableCommandConverter::GetValuesTableFromSeqEntry().

kUniversalPrimersLabel

const string kUniversalPrimersLabel = "universal primers"

static

Definition at line 680 of file tbl_edit_dlg.cpp.

Referenced by CPrimerTableCommandConverter::CheckForMixedValues(), CPrimerTableCommandConverter::GetChoices(), CPrimerTableCommandConverter::GetCommandFromValuesTable(), and CPrimerTableCommandConverter::GetValuesTableFromSeqEntry().