NCBI C++ ToolKit
Functions | Variables
test_table_reader_macro.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/test_boost.hpp>
#include <gui/packages/pkg_sequence_edit/table_reader_macro.hpp>
+ Include dependency graph for test_table_reader_macro.cpp:

Go to the source code of this file.

Go to the SVN repository for this file.

Functions

 USING_SCOPE (objects)
 
 NCBITEST_AUTO_INIT ()
 
 NCBITEST_AUTO_FINI ()
 
CRef< CUser_objectReadUserObj (const string &name)
 
 BOOST_AUTO_TEST_CASE (Test_Giraffe_ReplaceAll)
 
 BOOST_AUTO_TEST_CASE (Test_Giraffe_MatchTaxname)
 
 BOOST_AUTO_TEST_CASE (Test_GB_1932)
 
 BOOST_AUTO_TEST_CASE (Test_GB_6650)
 
 BOOST_AUTO_TEST_CASE (Test_GB_3565_MergeFirstCol)
 
 BOOST_AUTO_TEST_CASE (Test_GB_3533_SplitFirstCol)
 
 BOOST_AUTO_TEST_CASE (Test_GB_3533_MultiSpaceToTab)
 
 BOOST_AUTO_TEST_CASE (Test_GB_3533_Delimiters)
 
 BOOST_AUTO_TEST_CASE (Test_GB_3533_MergeDelimiters)
 
 BOOST_AUTO_TEST_CASE (Test_Bsrc_PubMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Bsrc_GeneMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Bsrc_RNAGeneSynMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Bsrc_DoubleCultColl)
 
 BOOST_AUTO_TEST_CASE (Test_Bsrc_MatchSUBID)
 
 BOOST_AUTO_TEST_CASE (Test_Bsrc_MultipleSpacesOnly)
 
 BOOST_AUTO_TEST_CASE (Test_ApplyGenome)
 
 BOOST_AUTO_TEST_CASE (Test_DBLinkMulti)
 
 BOOST_AUTO_TEST_CASE (Test_DBLinkBsrcMatch)
 
 BOOST_AUTO_TEST_CASE (Test_BsrcMolinfoMatch)
 
 BOOST_AUTO_TEST_CASE (Test_BsrcInstMatch)
 
 BOOST_AUTO_TEST_CASE (Test_BsrcDBLinkMatch)
 
 BOOST_AUTO_TEST_CASE (Test_DBLink_StrCommFieldMatch)
 
 BOOST_AUTO_TEST_CASE (Test_DBLink_MolinfoMatch)
 
 BOOST_AUTO_TEST_CASE (Test_DBLink_MolinfoInstMatch)
 
 BOOST_AUTO_TEST_CASE (Test_StructCommField_BsrcMatch)
 
 BOOST_AUTO_TEST_CASE (Test_StructCommField_DblinkMatch)
 
 BOOST_AUTO_TEST_CASE (Test_StructCommDB_SeqIdMatch)
 
 BOOST_AUTO_TEST_CASE (Test_StructCommFieldname_DBLinkMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Molinfo_BsrcMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Molinfo_SeqIDMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Molinfo_DBLinkMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Molinfo_MolinfoMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Misc_BsrcMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Misc_SeqIDMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Misc_DBLinkMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Misc_PubMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Misc_GeneMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Misc_CdsGeneProtMatch)
 
 BOOST_AUTO_TEST_CASE (Test_PubAffil_SeqIDMatch)
 
 BOOST_AUTO_TEST_CASE (Test_PubVol_BsrcMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Pub_DBLinkMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Pub_PubMatch)
 
 BOOST_AUTO_TEST_CASE (Test_Pub_StrCommMatch)
 
 BOOST_AUTO_TEST_CASE (Test_FeatGene_GeneMatch)
 
 BOOST_AUTO_TEST_CASE (Test_FeatGene1_GeneMatch)
 
void CheckCreateProtFeatMacro (const string &macro)
 
 BOOST_AUTO_TEST_CASE (Test_FeatProtein_GeneMatch)
 
 BOOST_AUTO_TEST_CASE (Test_FeatCDS_ProteinMatch)
 
 BOOST_AUTO_TEST_CASE (Test_FeatCDS1_ProteinMatch)
 
 BOOST_AUTO_TEST_CASE (Test_FeatGene_IDMatch)
 
 BOOST_AUTO_TEST_CASE (Test_FeatProtein_BsrcMatch)
 
 BOOST_AUTO_TEST_CASE (Test_FeatProtein_DBLinkMatch)
 
 BOOST_AUTO_TEST_CASE (Test_FeatGB_8268)
 
 BOOST_AUTO_TEST_CASE (Test_CdsGeneProt_GeneMatch)
 
 BOOST_AUTO_TEST_CASE (Test_CDSGeneProt1_GeneMatch)
 
 BOOST_AUTO_TEST_CASE (Test_CDSGeneProtmRNA_CDSMatch)
 
 BOOST_AUTO_TEST_CASE (Test_CDSGeneProtMatPeptide_GeneMatch)
 
 BOOST_AUTO_TEST_CASE (Test_CDSGeneProt_CDSInference)
 
 BOOST_AUTO_TEST_CASE (Test_RNA_SeqIdMatch)
 
 BOOST_AUTO_TEST_CASE (Test_mRNA_GeneMatch)
 
 BOOST_AUTO_TEST_CASE (Test_ncRNA_SeqIDMatch)
 
 BOOST_AUTO_TEST_CASE (Test_rRNA_BsrcMatch)
 
 BOOST_AUTO_TEST_CASE (Test_rRNA_CdsGeneProtMatch)
 
 BOOST_AUTO_TEST_CASE (Test_BsrcAndStrucComment)
 
 BOOST_AUTO_TEST_CASE (Test_BsrcAndrRNA)
 
 BOOST_AUTO_TEST_CASE (Test_GeneDbXrefMatch)
 
 BOOST_AUTO_TEST_CASE (Test_GeneSetDbXref)
 
 BOOST_AUTO_TEST_CASE (Test_PmidMatch_BsrcDBlinkPubFeat)
 

Variables

 USING_NCBI_SCOPE
 
const char * sc_Test_GiraffetblReplaceAll
 
const char * sc_Test_GiraffetblMatchTaxname
 
const char * sc_Test_GB1932
 
const char * sc_Test_GB6650
 
const char * sc_Test_GB3565
 
const char * sc_Test_GB3533
 
const char * sc_Test_GB3533Multi
 
const char * sc_Test_GB3533Delimiter
 
const char * sc_Test_GB3533MergeDels
 
const char * sc_Test_BsrcMolinfoMatch
 
const char * sc_Test_BsrcInstMatch
 
const char * sc_Test_BsrcDBLinkMatch
 
const char * sc_Test_BsrcPubMatch
 
const char * sc_Test_BsrcFeatQualMatch
 
const char * sc_Test_BsrcCdsGeneProtMatch
 
const char * sc_Test_BsrcRnaGeneSynMatch
 
const char * sc_Test_BsrcDoubleCultColl
 
const char * sc_Test_BsrcSubmissionID
 
const char * sc_Test_BsrcMultipleSpsOnly
 
const char * sc_Test_ApplyGenome
 
const char * sc_Test_DBLinkMulti
 
const char * sc_Test_DBLinkBsrcMatch
 
const char * sc_Test_DBLinkStrCommFieldMatch
 
const char * sc_Test_DBLinkMolinfoMatch
 
const char * sc_Test_DBLinkMolinfoInstMatch
 
const char * sc_TestStrCommFieldBsrcMatch
 
const char * sc_TestStrCommFieldDbLinkMatch
 
const char * sc_TestStrCommDBSeqidMatch
 
const char * sc_TestStrCommFieldnameDblinkMatch
 
const char * sc_TestMolinfoBsrcMatch
 
const char * sc_TestMolinfoSeqIDMatch
 
const char * sc_TestMolinfoDBLinkMatch
 
const char * sc_TestMolinfoMolinfoMatch
 
const char * sc_TestMiscBsrcMatch
 
const char * sc_TestMiscSeqIdMatch
 
const char * sc_TestMiscDBLinkMatch
 
const char * sc_TestMiscPubMatch
 
const char * sc_TestMiscGeneMatch
 
const char * sc_TestMiscCdsGeneProtMatch
 
const char * sc_TestPubSeqIDMatch
 
const char * sc_TestPubBsrcMatch
 
const char * sc_TestPubDBLinkMatch
 
const char * sc_TestPubPubMatch
 
const char * sc_TestPubStrCommMatch
 
const char * sc_TestFeatGene_GeneMatch
 
const char * sc_TestFeatGene1_GeneMatch
 
const char * sc_TestFeatProtein_GeneMatch
 
const char * sc_TestFeatCDS_ProteinMatch
 
const char * sc_TestFeatGene_IDMatch
 
const char * sc_TestFeatProtein_BsrcMatch
 
const char * sc_TestFeatProtein_DBLinkMatch
 
const char * sc_TestFeat_GB8268
 
const char * sc_TestFeatGene_CdsGeneProtMatch
 
const char * sc_TestGeneDbxref_GeneMatch
 
const char * sc_TestCGProt_GeneMatch
 
const char * sc_TestCGProt1_GeneMatch
 
const char * sc_TestCGPProtein_GeneMatch
 
const char * sc_TestCGPCDS_ProteinMatch
 
const char * sc_TestCGPCDS1_ProteinMatch
 
const char * sc_TestCGPGene_IDMatch
 
const char * sc_TestCGPProtein_BsrcMatch
 
const char * sc_TestCGPProtein_DBLinkMatch
 
const char * sc_TestCGPmRNA_CDSMatch
 
const char * sc_TestCGPMatPeptide_GeneMatch
 
const char * sc_TestCGP_GeneDbxrefMatch
 
const char * sc_TestCGPCdsInference_CdsNoteMatch
 
const char * sc_TestRNA_SeqIDMatch
 
const char * sc_TestmRNA_GeneMatch
 
const char * sc_TestncRNA_SeqIDMatch
 
const char * sc_TestrRNA_BsrcMatch
 
const char * sc_TestrRNA_GeneLocusTagMatch
 
const char * sc_TestBsrc_StructuredComment
 
const char * sc_TestBsrc_rRNAComment
 
const char * sc_TestMany_PmidMatch
 

Function Documentation

◆ BOOST_AUTO_TEST_CASE() [1/67]

BOOST_AUTO_TEST_CASE ( Test_ApplyGenome  )

◆ BOOST_AUTO_TEST_CASE() [2/67]

BOOST_AUTO_TEST_CASE ( Test_Bsrc_DoubleCultColl  )

◆ BOOST_AUTO_TEST_CASE() [3/67]

BOOST_AUTO_TEST_CASE ( Test_Bsrc_GeneMatch  )

◆ BOOST_AUTO_TEST_CASE() [4/67]

BOOST_AUTO_TEST_CASE ( Test_Bsrc_MatchSUBID  )

◆ BOOST_AUTO_TEST_CASE() [5/67]

BOOST_AUTO_TEST_CASE ( Test_Bsrc_MultipleSpacesOnly  )

◆ BOOST_AUTO_TEST_CASE() [6/67]

BOOST_AUTO_TEST_CASE ( Test_Bsrc_PubMatch  )

◆ BOOST_AUTO_TEST_CASE() [7/67]

BOOST_AUTO_TEST_CASE ( Test_Bsrc_RNAGeneSynMatch  )

◆ BOOST_AUTO_TEST_CASE() [8/67]

BOOST_AUTO_TEST_CASE ( Test_BsrcAndrRNA  )

◆ BOOST_AUTO_TEST_CASE() [9/67]

BOOST_AUTO_TEST_CASE ( Test_BsrcAndStrucComment  )

◆ BOOST_AUTO_TEST_CASE() [10/67]

BOOST_AUTO_TEST_CASE ( Test_BsrcDBLinkMatch  )

◆ BOOST_AUTO_TEST_CASE() [11/67]

BOOST_AUTO_TEST_CASE ( Test_BsrcInstMatch  )

◆ BOOST_AUTO_TEST_CASE() [12/67]

BOOST_AUTO_TEST_CASE ( Test_BsrcMolinfoMatch  )

◆ BOOST_AUTO_TEST_CASE() [13/67]

BOOST_AUTO_TEST_CASE ( Test_CDSGeneProt1_GeneMatch  )

◆ BOOST_AUTO_TEST_CASE() [14/67]

BOOST_AUTO_TEST_CASE ( Test_CDSGeneProt_CDSInference  )

◆ BOOST_AUTO_TEST_CASE() [15/67]

BOOST_AUTO_TEST_CASE ( Test_CdsGeneProt_GeneMatch  )

◆ BOOST_AUTO_TEST_CASE() [16/67]

BOOST_AUTO_TEST_CASE ( Test_CDSGeneProtMatPeptide_GeneMatch  )

◆ BOOST_AUTO_TEST_CASE() [17/67]

BOOST_AUTO_TEST_CASE ( Test_CDSGeneProtmRNA_CDSMatch  )

◆ BOOST_AUTO_TEST_CASE() [18/67]

BOOST_AUTO_TEST_CASE ( Test_DBLink_MolinfoInstMatch  )

◆ BOOST_AUTO_TEST_CASE() [19/67]

BOOST_AUTO_TEST_CASE ( Test_DBLink_MolinfoMatch  )

◆ BOOST_AUTO_TEST_CASE() [20/67]

BOOST_AUTO_TEST_CASE ( Test_DBLink_StrCommFieldMatch  )

◆ BOOST_AUTO_TEST_CASE() [21/67]

BOOST_AUTO_TEST_CASE ( Test_DBLinkBsrcMatch  )

◆ BOOST_AUTO_TEST_CASE() [22/67]

BOOST_AUTO_TEST_CASE ( Test_DBLinkMulti  )

◆ BOOST_AUTO_TEST_CASE() [23/67]

BOOST_AUTO_TEST_CASE ( Test_FeatCDS1_ProteinMatch  )

◆ BOOST_AUTO_TEST_CASE() [24/67]

BOOST_AUTO_TEST_CASE ( Test_FeatCDS_ProteinMatch  )

◆ BOOST_AUTO_TEST_CASE() [25/67]

BOOST_AUTO_TEST_CASE ( Test_FeatGB_8268  )

◆ BOOST_AUTO_TEST_CASE() [26/67]

BOOST_AUTO_TEST_CASE ( Test_FeatGene1_GeneMatch  )

◆ BOOST_AUTO_TEST_CASE() [27/67]

BOOST_AUTO_TEST_CASE ( Test_FeatGene_GeneMatch  )

◆ BOOST_AUTO_TEST_CASE() [28/67]

BOOST_AUTO_TEST_CASE ( Test_FeatGene_IDMatch  )

◆ BOOST_AUTO_TEST_CASE() [29/67]

BOOST_AUTO_TEST_CASE ( Test_FeatProtein_BsrcMatch  )

◆ BOOST_AUTO_TEST_CASE() [30/67]

BOOST_AUTO_TEST_CASE ( Test_FeatProtein_DBLinkMatch  )

◆ BOOST_AUTO_TEST_CASE() [31/67]

BOOST_AUTO_TEST_CASE ( Test_FeatProtein_GeneMatch  )

◆ BOOST_AUTO_TEST_CASE() [32/67]

BOOST_AUTO_TEST_CASE ( Test_GB_1932  )

◆ BOOST_AUTO_TEST_CASE() [33/67]

BOOST_AUTO_TEST_CASE ( Test_GB_3533_Delimiters  )

◆ BOOST_AUTO_TEST_CASE() [34/67]

BOOST_AUTO_TEST_CASE ( Test_GB_3533_MergeDelimiters  )

◆ BOOST_AUTO_TEST_CASE() [35/67]

BOOST_AUTO_TEST_CASE ( Test_GB_3533_MultiSpaceToTab  )

◆ BOOST_AUTO_TEST_CASE() [36/67]

BOOST_AUTO_TEST_CASE ( Test_GB_3533_SplitFirstCol  )

◆ BOOST_AUTO_TEST_CASE() [37/67]

BOOST_AUTO_TEST_CASE ( Test_GB_3565_MergeFirstCol  )

◆ BOOST_AUTO_TEST_CASE() [38/67]

BOOST_AUTO_TEST_CASE ( Test_GB_6650  )

◆ BOOST_AUTO_TEST_CASE() [39/67]

BOOST_AUTO_TEST_CASE ( Test_GeneDbXrefMatch  )

◆ BOOST_AUTO_TEST_CASE() [40/67]

BOOST_AUTO_TEST_CASE ( Test_GeneSetDbXref  )

◆ BOOST_AUTO_TEST_CASE() [41/67]

BOOST_AUTO_TEST_CASE ( Test_Giraffe_MatchTaxname  )

◆ BOOST_AUTO_TEST_CASE() [42/67]

BOOST_AUTO_TEST_CASE ( Test_Giraffe_ReplaceAll  )

◆ BOOST_AUTO_TEST_CASE() [43/67]

BOOST_AUTO_TEST_CASE ( Test_Misc_BsrcMatch  )

◆ BOOST_AUTO_TEST_CASE() [44/67]

BOOST_AUTO_TEST_CASE ( Test_Misc_CdsGeneProtMatch  )

◆ BOOST_AUTO_TEST_CASE() [45/67]

BOOST_AUTO_TEST_CASE ( Test_Misc_DBLinkMatch  )

◆ BOOST_AUTO_TEST_CASE() [46/67]

BOOST_AUTO_TEST_CASE ( Test_Misc_GeneMatch  )

◆ BOOST_AUTO_TEST_CASE() [47/67]

BOOST_AUTO_TEST_CASE ( Test_Misc_PubMatch  )

◆ BOOST_AUTO_TEST_CASE() [48/67]

BOOST_AUTO_TEST_CASE ( Test_Misc_SeqIDMatch  )

◆ BOOST_AUTO_TEST_CASE() [49/67]

BOOST_AUTO_TEST_CASE ( Test_Molinfo_BsrcMatch  )

◆ BOOST_AUTO_TEST_CASE() [50/67]

BOOST_AUTO_TEST_CASE ( Test_Molinfo_DBLinkMatch  )

◆ BOOST_AUTO_TEST_CASE() [51/67]

BOOST_AUTO_TEST_CASE ( Test_Molinfo_MolinfoMatch  )

◆ BOOST_AUTO_TEST_CASE() [52/67]

BOOST_AUTO_TEST_CASE ( Test_Molinfo_SeqIDMatch  )

◆ BOOST_AUTO_TEST_CASE() [53/67]

BOOST_AUTO_TEST_CASE ( Test_mRNA_GeneMatch  )

◆ BOOST_AUTO_TEST_CASE() [54/67]

BOOST_AUTO_TEST_CASE ( Test_ncRNA_SeqIDMatch  )

◆ BOOST_AUTO_TEST_CASE() [55/67]

BOOST_AUTO_TEST_CASE ( Test_PmidMatch_BsrcDBlinkPubFeat  )

◆ BOOST_AUTO_TEST_CASE() [56/67]

BOOST_AUTO_TEST_CASE ( Test_Pub_DBLinkMatch  )

◆ BOOST_AUTO_TEST_CASE() [57/67]

BOOST_AUTO_TEST_CASE ( Test_Pub_PubMatch  )

◆ BOOST_AUTO_TEST_CASE() [58/67]

BOOST_AUTO_TEST_CASE ( Test_Pub_StrCommMatch  )

◆ BOOST_AUTO_TEST_CASE() [59/67]

BOOST_AUTO_TEST_CASE ( Test_PubAffil_SeqIDMatch  )

◆ BOOST_AUTO_TEST_CASE() [60/67]

BOOST_AUTO_TEST_CASE ( Test_PubVol_BsrcMatch  )

◆ BOOST_AUTO_TEST_CASE() [61/67]

BOOST_AUTO_TEST_CASE ( Test_RNA_SeqIdMatch  )

◆ BOOST_AUTO_TEST_CASE() [62/67]

BOOST_AUTO_TEST_CASE ( Test_rRNA_BsrcMatch  )

◆ BOOST_AUTO_TEST_CASE() [63/67]

BOOST_AUTO_TEST_CASE ( Test_rRNA_CdsGeneProtMatch  )

◆ BOOST_AUTO_TEST_CASE() [64/67]

BOOST_AUTO_TEST_CASE ( Test_StructCommDB_SeqIdMatch  )

◆ BOOST_AUTO_TEST_CASE() [65/67]

BOOST_AUTO_TEST_CASE ( Test_StructCommField_BsrcMatch  )

◆ BOOST_AUTO_TEST_CASE() [66/67]

BOOST_AUTO_TEST_CASE ( Test_StructCommField_DblinkMatch  )

◆ BOOST_AUTO_TEST_CASE() [67/67]

BOOST_AUTO_TEST_CASE ( Test_StructCommFieldname_DBLinkMatch  )

◆ CheckCreateProtFeatMacro()

void CheckCreateProtFeatMacro ( const string macro)

Definition at line 2537 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ NCBITEST_AUTO_FINI()

NCBITEST_AUTO_FINI ( )

Definition at line 132 of file test_table_reader_macro.cpp.

◆ NCBITEST_AUTO_INIT()

NCBITEST_AUTO_INIT ( )

Definition at line 128 of file test_table_reader_macro.cpp.

◆ ReadUserObj()

CRef<CUser_object> ReadUserObj ( const string name)

Definition at line 136 of file test_table_reader_macro.cpp.

References MSerial_AsnText.

Referenced by BOOST_AUTO_TEST_CASE().

◆ USING_SCOPE()

USING_SCOPE ( objects  )

Variable Documentation

◆ sc_Test_ApplyGenome

const char * sc_Test_ApplyGenome
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=genome&qualifier=genome&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 982 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_BsrcCdsGeneProtMatch

const char * sc_Test_BsrcCdsGeneProtMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replac\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match gene synonym&qualifier=gene synonym&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=strain&qualifier=strain&qual_type=Taxname&blanks=ignore&text_separator=;&update_rule=append\" \
} \
} \
}"

Definition at line 738 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_BsrcDBLinkMatch

const char * sc_Test_BsrcDBLinkMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match BioSample&qualifier=BioSample&qual_type=DBLink Field&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=note-subsource&qualifier=note-subsource&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1215 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_BsrcDoubleCultColl

const char * sc_Test_BsrcDoubleCultColl
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=taxname&qualifier=taxname&qual_type=Taxname&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=culture-collection&qualifier=culture-collection&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=culture-collection&qualifier=culture-collection&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=append\" \
} \
} \
}"

Definition at line 838 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_BsrcFeatQualMatch

const char * sc_Test_BsrcFeatQualMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replac\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match Gene gene_synonym&qualifier=Gene gene_synonym&qual_type=Feature Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=strain&qualifier=strain&qual_type=Taxname&blanks=ignore&text_separator=;&update_rule=append\" \
} \
} \
}"

Definition at line 719 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_BsrcInstMatch

const char * sc_Test_BsrcInstMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match topology&qualifier=topology&qual_type=MolInfo Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=taxname&qualifier=taxname&qual_type=Taxname&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1172 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_BsrcMolinfoMatch

const char * sc_Test_BsrcMolinfoMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=accession&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=add_new_qual\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match technique&qualifier=technique&qual_type=MolInfo Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=clone&qualifier=clone&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=append\" \
} \
} \
}"

Definition at line 1126 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_BsrcMultipleSpsOnly

const char * sc_Test_BsrcMultipleSpsOnly
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=taxname&qualifier=taxname&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=note-orgmod&qualifier=note-orgmod&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 936 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_BsrcPubMatch

const char * sc_Test_BsrcPubMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match pmid&qualifier=pmid&qual_type=Pub Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=taxname&qualifier=taxname&qual_type=Taxname&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 671 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_BsrcRnaGeneSynMatch

const char * sc_Test_BsrcRnaGeneSynMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=accession&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match mRNA gene synonym&qualifier=mRNA gene synonym&qual_type=RNA Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=strain&qualifier=strain&qual_type=Source Qualifier&blanks=ignore&text_separator=:&update_rule=append\" \
} \
} \
}"

Definition at line 786 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_BsrcSubmissionID

const char * sc_Test_BsrcSubmissionID
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=taxname&qualifier=taxname&qual_type=Taxname&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 889 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_DBLinkBsrcMatch

const char * sc_Test_DBLinkBsrcMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match clone&qualifier=clone&qual_type=Source Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=BioSample&qualifier=BioSample&qual_type=DBLink Field&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1083 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_DBLinkMolinfoInstMatch

const char * sc_Test_DBLinkMolinfoInstMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=false&name=BioProject&qualifier=BioProject&qual_type=DBLink Field&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match topology&qualifier=topology&qual_type=MolInfo Qualifier&blanks=ignore\" \
} \
} \
}"

Definition at line 1341 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_DBLinkMolinfoMatch

const char * sc_Test_DBLinkMolinfoMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=false&name=BioSample&qualifier=BioSample&qual_type=DBLink Field&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match technique&qualifier=technique&qual_type=MolInfo Qualifier&blanks=ignore\" \
} \
} \
}"

Definition at line 1299 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_DBLinkMulti

const char * sc_Test_DBLinkMulti
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match BioSample&qualifier=BioSample&qual_type=DBLink Field&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=Sequence Read Archive&qualifier=Sequence Read Archive&qual_type=DBLink Field&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1040 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_DBLinkStrCommFieldMatch

const char * sc_Test_DBLinkStrCommFieldMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=false&name=BioProject&qualifier=BioProject&qual_type=DBLink Field&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match Structured comment Field Genome Coverage&qualifier=Structured comment Field Genome Coverage&qual_type=Structured Comment&blanks=ignore\" \
} \
} \
}"

Definition at line 1257 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_GB1932

const char * sc_Test_GB1932
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match clone&qualifier=clone&qual_type=Source Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=isolation-source&qualifier=isolation-source&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 312 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_GB3533

const char * sc_Test_GB3533
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=taxname&qualifier=taxname&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=isolate&qualifier=isolate&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=note-orgmod&qualifier=note-orgmod&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 462 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_GB3533Delimiter

const char * sc_Test_GB3533Delimiter
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=taxname&qualifier=taxname&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=isolation-source&qualifier=isolation-source&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=true&match=false&name=Col 3&qualifier=&qual_type=\" \
} \
} \
}"

Definition at line 567 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_GB3533MergeDels

const char * sc_Test_GB3533MergeDels
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=taxname&qualifier=taxname&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=isolation-source&qualifier=isolation-source&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=true&match=false&name=Col 3&qualifier=&qual_type=\" \
} \
} \
}"

Definition at line 621 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_GB3533Multi

const char * sc_Test_GB3533Multi
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=false&name=taxname&qualifier=taxname&qual_type=Taxname&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=isolation-source&qualifier=isolation-source&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
} \
} \
}"

Definition at line 517 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_GB3565

const char * sc_Test_GB3565
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=taxname&qualifier=taxname&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=strain&qualifier=strain&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 409 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_GB6650

const char * sc_Test_GB6650
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=specimen-voucher-specid&qualifier=specimen-voucher-specid&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=specimen-voucher-inst&qualifier=specimen-voucher-inst&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 357 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_GiraffetblMatchTaxname

const char * sc_Test_GiraffetblMatchTaxname
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Accession&qualifier=SeqId&qual_type = SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match taxname&qualifier=taxname&qual_type=Taxname&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=acronym&qualifier=acronym&qual_type=Source Qualifier&blanks=ignore&text_separator=:&update_rule=append\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=isolate&qualifier=isolate&qual_type=Source Qualifier&blanks=erase&text_separator=,&update_rule=prefix\" \
}, \
{ \
label str \"Column.5\", \
data str \"&skipped=false&match=false&name=serotype&qualifier=serotype&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 256 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_Test_GiraffetblReplaceAll

const char * sc_Test_GiraffetblReplaceAll
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=taxname&qualifier=taxname&qual_type=Taxname&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=acronym&qualifier=acronym&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=isolate&qualifier=isolate&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.5\", \
data str \"&skipped=false&match=false&name=serotype&qualifier=serotype&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 195 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestBsrc_rRNAComment

const char * sc_TestBsrc_rRNAComment
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=strain&qualifier=strain&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=rRNA comment&qualifier=rRNA comment&qual_type=RNA Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3681 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestBsrc_StructuredComment

const char * sc_TestBsrc_StructuredComment
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match clone&qualifier=clone&qual_type=Source Qualifier&blanks=ignore&update_rule=add_new_qual\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=isolation-source&qualifier=isolation-source&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=Structured comment Field Sequencing Technology&qualifier=Structured comment Field Sequencing Technology&qual_type=Structured Comment&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3616 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGP_GeneDbxrefMatch

const char * sc_TestCGP_GeneDbxrefMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Gene db_xref&qualifier=Gene db_xref&qual_type=Feature Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=gene locus&qualifier=gene locus&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=protein name&qualifier=protein name&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3731 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGPCDS1_ProteinMatch

const char * sc_TestCGPCDS1_ProteinMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match protein EC number&qualifier=protein EC number&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=CDS comment&qualifier=CDS comment&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2744 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGPCDS_ProteinMatch

const char * sc_TestCGPCDS_ProteinMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=CDS comment&qualifier=CDS comment&qual_type=CDS-Gene-Prot Qualifier&blanks=erase&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=true&match=false&name=Col 3&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=true&name=match protein name&qualifier=protein name&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2692 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGPCdsInference_CdsNoteMatch

const char * sc_TestCGPCdsInference_CdsNoteMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match CDS comment&qualifier=CDS comment&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=protein name&qualifier=protein name&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=CDS inference&qualifier=CDS inference&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3297 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGPGene_IDMatch

const char * sc_TestCGPGene_IDMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match accession&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=true&match=false&name=strain&qualifier=strain&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=true&match=false&name=ProbeDB&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=gene synonym&qualifier=gene synonym&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=add_new_qual\" \
} \
} \
}"

Definition at line 2819 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGPMatPeptide_GeneMatch

const char * sc_TestCGPMatPeptide_GeneMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match gene synonym&qualifier=gene synonym&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=mat_peptide name&qualifier=mat_peptide name&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=,&update_rule=prefix\" \
} \
} \
}"

Definition at line 3249 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGPmRNA_CDSMatch

const char * sc_TestCGPmRNA_CDSMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match CDS inference&qualifier=CDS inference&qual_type=Feature Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=mRNA product&qualifier=mRNA product&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3205 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGPProtein_BsrcMatch

const char * sc_TestCGPProtein_BsrcMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match strain&qualifier=strain&qual_type=Source Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=protein name&qualifier=protein name&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=mRNA comment&qualifier=mRNA comment&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2901 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGPProtein_DBLinkMatch

const char * sc_TestCGPProtein_DBLinkMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match ProbeDB&qualifier=ProbeDB&qual_type=DBLink Field&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=true&match=false&name=synonym&qualifier=synonym&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=protein EC number&qualifier=protein EC number&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2977 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGPProtein_GeneMatch

const char * sc_TestCGPProtein_GeneMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match gene locus tag&qualifier=gene locus tag&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=true&match=false&name=Col 3&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=protein name&qualifier=protein name&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2611 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGProt1_GeneMatch

const char * sc_TestCGProt1_GeneMatch

Definition at line 3137 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestCGProt_GeneMatch

const char * sc_TestCGProt_GeneMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match gene locus tag&qualifier=gene locus tag&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=gene description&qualifier=gene description&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3085 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestFeat_GB8268

const char * sc_TestFeat_GB8268
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=mobile_element mobile_element_type_name&qualifier=mobile_element mobile_element_type_name&qual_type=Feature Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3025 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestFeatCDS_ProteinMatch

const char * sc_TestFeatCDS_ProteinMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=CDS note&qualifier=CDS note&qual_type=Feature Qualifier&blanks=erase&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=true&match=false&name=Col 7&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=true&name=match CDS product&qualifier=CDS product&qual_type=Feature Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2669 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestFeatGene1_GeneMatch

const char * sc_TestFeatGene1_GeneMatch

Definition at line 2498 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestFeatGene_CdsGeneProtMatch

const char * sc_TestFeatGene_CdsGeneProtMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match gene locus tag&qualifier=gene locus tag&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=true&match=false&name=Col 3&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=Gene locus&qualifier=Gene locus&qual_type=Feature Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2443 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestFeatGene_GeneMatch

const char * sc_TestFeatGene_GeneMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match Gene locus_tag&qualifier=Gene locus_tag&qual_type=Feature Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=true&match=false&name=Col 3&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=Gene locus&qualifier=Gene locus&qual_type=Feature Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2420 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestFeatGene_IDMatch

const char * sc_TestFeatGene_IDMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match accession&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=true&match=false&name=strain&qualifier=strain&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=true&match=false&name=ProbeDB&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=Gene gene_synonym&qualifier=Gene gene_synonym&qual_type=Feature Qualifier&blanks=ignore&text_separator=;&update_rule=add_new_qual\" \
} \
} \
}"

Definition at line 2795 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestFeatProtein_BsrcMatch

const char * sc_TestFeatProtein_BsrcMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match strain&qualifier=strain&qual_type=Source Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=CDS product&qualifier=CDS product&qual_type=Feature Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=mRNA note&qualifier=mRNA note&qual_type=Feature Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2882 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestFeatProtein_DBLinkMatch

const char * sc_TestFeatProtein_DBLinkMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match ProbeDB&qualifier=ProbeDB&qual_type=DBLink Field&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=true&match=false&name=synonym&qualifier=synonym&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=CDS EC_number&qualifier=CDS EC_number&qual_type=Feature Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2958 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestFeatProtein_GeneMatch

const char * sc_TestFeatProtein_GeneMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match Gene locus_tag&qualifier=Gene locus_tag&qual_type=Feature Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=true&match=false&name=Col 3&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=CDS product&qualifier=CDS product&qual_type=Feature Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2587 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestGeneDbxref_GeneMatch

const char * sc_TestGeneDbxref_GeneMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match gene comment&qualifier=gene comment&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=Gene db_xref&qualifier=Gene db_xref&qual_type=Feature Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3779 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestMany_PmidMatch

const char * sc_TestMany_PmidMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match pmid&qualifier=pmid&qual_type=Pub Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=author name list&qualifier=author name list&qual_type=Pub Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=country&qualifier=country&qual_type=Source Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=BioSample&qualifier=BioSample&qual_type=DBLink Field&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.5\", \
data str \"&skipped=false&match=false&name=tRNA comment&qualifier=tRNA comment&qual_type=RNA Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3879 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestMiscBsrcMatch

const char * sc_TestMiscBsrcMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match clone&qualifier=clone&qual_type=Source Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=Definition Line&qualifier=Definition Line&qual_type=Misc Qualifiers&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=Comment Descriptor&qualifier=Comment Descriptor&qual_type=Misc Qualifiers&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=Keyword&qualifier=Keyword&qual_type=Misc Qualifiers&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1814 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestMiscCdsGeneProtMatch

const char * sc_TestMiscCdsGeneProtMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match gene old_locus_tag&qualifier=gene old_locus_tag&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=Keyword&qualifier=Keyword&qual_type=Misc Qualifiers&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2041 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestMiscDBLinkMatch

const char * sc_TestMiscDBLinkMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=accession&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match BioSample&qualifier=BioSample&qual_type=DBLink Field&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=Definition Line&qualifier=Definition Line&qual_type=Misc Qualifiers&blanks=ignore&text_separator=;&update_rule=prefix\" \
} \
} \
}"

Definition at line 1910 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestMiscGeneMatch

const char * sc_TestMiscGeneMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Gene old_locus_tag&qualifier=Gene old_locus_tag&qual_type=Feature Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=Comment Descriptor&qualifier=Comment Descriptor&qual_type=Misc Qualifiers&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1999 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestMiscPubMatch

const char * sc_TestMiscPubMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match pmid&qualifier=pmid&qual_type=Pub Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=Comment Descriptor&qualifier=Comment Descriptor&qual_type=Misc Qualifiers&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1956 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestMiscSeqIdMatch

const char * sc_TestMiscSeqIdMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=true&match=false&name=biosample&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=Definition Line&qualifier=Definition Line&qual_type=Misc Qualifiers&blanks=ignore&text_separator=;&update_rule=append\" \
} \
} \
}"

Definition at line 1864 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestMolinfoBsrcMatch

const char * sc_TestMolinfoBsrcMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match clone&qualifier=clone&qual_type=Source Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=technique&qualifier=technique&qual_type=MolInfo Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1605 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestMolinfoDBLinkMatch

const char * sc_TestMolinfoDBLinkMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match BioSample&qualifier=BioSample&qual_type=DBLink Field&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=molecule&qualifier=molecule&qual_type=MolInfo Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=class&qualifier=class&qual_type=MolInfo Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=true&match=false&name=Col 4&qualifier=&qual_type=\" \
} \
} \
}"

Definition at line 1693 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestMolinfoMolinfoMatch

const char * sc_TestMolinfoMolinfoMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=add_new_qual\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match technique&qualifier=technique&qual_type=MolInfo Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=molecule&qualifier=molecule&qual_type=MolInfo Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=topology&qualifier=topology&qual_type=MolInfo Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1745 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestMolinfoSeqIDMatch

const char * sc_TestMolinfoSeqIDMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=technique&qualifier=technique&qual_type=MolInfo Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1649 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestmRNA_GeneMatch

const char * sc_TestmRNA_GeneMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=accession&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match mRNA gene locus tag&qualifier=mRNA gene locus tag&qual_type=RNA Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=mRNA gene locus&qualifier=mRNA gene locus&qual_type=RNA Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=mRNA product&qualifier=mRNA product&qual_type=RNA Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3407 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestncRNA_SeqIDMatch

const char * sc_TestncRNA_SeqIDMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=ncRNA miRNA comment&qualifier=ncRNA miRNA comment&qual_type=RNA Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3457 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestPubBsrcMatch

const char * sc_TestPubBsrcMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Taxname&qualifier=Taxname&qual_type=Taxname&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=volume&qualifier=volume&qual_type=Pub Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=issue&qualifier=issue&qual_type=Pub Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=false&name=pages&qualifier=pages&qual_type=Pub Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.5\", \
data str \"&skipped=false&match=false&name=journal&qualifier=journal&qual_type=Pub Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.6\", \
data str \"&skipped=true&match=false&name=Column 6&qualifier=&qual_type=\" \
} \
} \
}"

Definition at line 2176 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestPubDBLinkMatch

const char * sc_TestPubDBLinkMatch

Definition at line 2248 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestPubPubMatch

const char * sc_TestPubPubMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match pmid&qualifier=pmid&qual_type=Pub Qualifier&blanks=ignore&update_rule=add_new_qual\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=author name list&qualifier=author name list&qual_type=Pub Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2314 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestPubSeqIDMatch

const char * sc_TestPubSeqIDMatch

Definition at line 2108 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestPubStrCommMatch

const char * sc_TestPubStrCommMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Structured comment Database Name&qualifier=Structured comment Database Name&qual_type=Structured Comment&blanks=ignore&update_rule=add_new_qual\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=author first name&qualifier=author first name&qual_type=Pub Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 2357 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestRNA_SeqIDMatch

const char * sc_TestRNA_SeqIDMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=RNA product&qualifier=RNA product&qual_type=RNA Qualifier&blanks=erase&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3363 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestrRNA_BsrcMatch

const char * sc_TestrRNA_BsrcMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=accession&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match strain&qualifier=strain&qual_type=Source Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=rRNA tag-peptide&qualifier=rRNA tag-peptide&qual_type=RNA Qualifier&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 3500 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestrRNA_GeneLocusTagMatch

const char * sc_TestrRNA_GeneLocusTagMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=accession&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=true&name=match gene locus tag&qualifier=gene locus tag&qual_type=CDS-Gene-Prot Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=rRNA product&qualifier=rRNA product&qual_type=RNA Qualifier&blanks=ignore&text_separator=;&update_rule=append\" \
} \
} \
}"

Definition at line 3546 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestStrCommDBSeqidMatch

const char * sc_TestStrCommDBSeqidMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match Seq-ID&qualifier=SeqId&qual_type=SeqId&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=true&match=false&name=Col 2&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=false&match=false&name=Structured comment Database Name&qualifier=Structured comment Database Name&qual_type=Structured Comment&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1495 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestStrCommFieldBsrcMatch

const char * sc_TestStrCommFieldBsrcMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=true&match=false&name=Col 1&qualifier=SeqId&qual_type=SeqId&blanks=ignore&text_separator=;&update_rule=replace\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=true&match=false&name=Col 2&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.3\", \
data str \"&skipped=true&match=false&name=Col 3&qualifier=&qual_type=\" \
}, \
{ \
label str \"Column.4\", \
data str \"&skipped=false&match=true&name=match strain&qualifier=strain&qual_type=Source Qualifier&blanks=ignore\" \
}, \
{ \
label str \"Column.5\", \
data str \"&skipped=false&match=false&name=Structured comment Field Genome Coverage&qualifier=Structured comment Field Genome Coverage&qual_type=Structured Comment&blanks=ignore&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1399 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestStrCommFieldDbLinkMatch

const char * sc_TestStrCommFieldDbLinkMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match BioSample&qualifier=BioSample&qual_type=DBLink Field&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=Structured comment Field Genome Coverage&qualifier=Structured comment Field Genome Coverage&qual_type=Structured Comment&blanks=erase&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1453 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ sc_TestStrCommFieldnameDblinkMatch

const char * sc_TestStrCommFieldnameDblinkMatch
Initial value:
= " \
User-object ::= { \
type str \"Column Meta Info\",\
data { \
{ \
label str \"Column.1\", \
data str \"&skipped=false&match=true&name=match BioSample&qualifier=BioSample&qual_type=DBLink Field&blanks=ignore\" \
}, \
{ \
label str \"Column.2\", \
data str \"&skipped=false&match=false&name=Structured comment Field Name&qualifier=Structured comment Field Name&qual_type=Structured Comment&blanks=erase&text_separator=;&update_rule=replace\" \
} \
} \
}"

Definition at line 1545 of file test_table_reader_macro.cpp.

Referenced by BOOST_AUTO_TEST_CASE().

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 39 of file test_table_reader_macro.cpp.

Modified on Thu May 30 12:25:53 2024 by modify_doxy.py rev. 669887