timing.hpp File Reference

#include "pubseq_gateway_types.hpp"
#include "psgs_request.hpp"
#include "time_series_stat.hpp"
#include "ipsgs_processor.hpp"
#include <vector>
#include <mutex>
#include <util/data_histogram.hpp>
#include <connect/services/json_over_uttp.hpp>

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Classes
class	CPSGTimingBase
class	CLmdbCacheTiming
class	CLmdbResolutionTiming
class	CCassTiming
class	CMyNCBITiming
class	CCassResolutionTiming
class	CHugeBlobRetrieveTiming
class	CNotFoundBlobRetrieveTiming
class	CNARetrieveTiming
class	CSplitHistoryRetrieveTiming
class	CPublicCommentRetrieveTiming
class	CAccVerHistoryRetrieveTiming
class	CIPGResolveRetrieveTiming
class	CTSEChunkRetrieveTiming
class	CNAResolveTiming
class	CVDBOpenTiming
class	CSNPPTISLookupTiming
class	CWGSVDBLookupTiming
class	CResolutionTiming
class	CBacklogTiming
class	CProcessorPerformanceTiming
class	CBlobRetrieveTiming
class	COperationTiming
struct	COperationTiming::SInfo

Macros
#define	TIMING_CLASS(class_name)

Typedefs
typedef CHistogram< uint64_t, uint64_t, uint64_t >	TOnePSGTiming
typedef CHistogramTimeSeries< uint64_t, uint64_t, uint64_t >	TPSGTiming

Enumerations
enum	EPSGOperationStatus { eOpStatusFound , eOpStatusNotFound }
enum	EPSGOperation {   eLookupLmdbSi2csi = 0 , eLookupLmdbBioseqInfo , eLookupLmdbBlobProp , eLookupCassSi2csi ,   eLookupCassBioseqInfo , eLookupCassBlobProp , eMyNCBIRetrieve , eMyNCBIRetrieveError ,   eResolutionLmdb , eResolutionCass , eResolutionFoundInCassandra , eSplitHistoryRetrieve ,   ePublicCommentRetrieve , eAccVerHistRetrieve , eIPGResolveRetrieve , eVDBOpen ,   eBacklog , eSNP_PTISLookup , eWGS_VDBLookup , eResolutionError ,   eResolutionNotFound , eResolutionFound , eBlobRetrieve , eNARetrieve ,   eTseChunkRetrieve , eNAResolve , eOperationLast }

Functions
CJsonNode	SerializeHistogram (const TOnePSGTiming &histogram, const string &name, const string &description, uint64_t max_value)

Variables
	USING_NCBI_SCOPE
const unsigned long	kMinStatValue = 0
const unsigned long	kMaxStatValue = 16 * 1024 * 1024
const unsigned long	kNStatBins = 24
const string	kStatScaleType = "log"
const unsigned long	kTickSpan = 10

Macro Definition Documentation

TIMING_CLASS

#define TIMING_CLASS

(

class_name

)

Value:

    class class_name : public CPSGTimingBase                    \
    {                                                           \
        public:                                                 \
            class_name(unsigned long  min_stat_value,           \
                       unsigned long  max_stat_value,           \
                       unsigned long  n_bins,                   \
                       TOnePSGTiming::EScaleType  stat_type,    \
                       bool &  reset_to_default);               \
    }

Definition at line 218 of file timing.hpp.

Typedef Documentation

TOnePSGTiming

typedef CHistogram<uint64_t, uint64_t, uint64_t> TOnePSGTiming

Definition at line 116 of file timing.hpp.

TPSGTiming

typedef CHistogramTimeSeries<uint64_t, uint64_t, uint64_t> TPSGTiming

Definition at line 117 of file timing.hpp.

Enumeration Type Documentation

EPSGOperation

enum EPSGOperation

Enumerator
eLookupLmdbSi2csi
eLookupLmdbBioseqInfo
eLookupLmdbBlobProp
eLookupCassSi2csi
eLookupCassBioseqInfo
eLookupCassBlobProp
eMyNCBIRetrieve
eMyNCBIRetrieveError
eResolutionLmdb
eResolutionCass
eResolutionFoundInCassandra
eSplitHistoryRetrieve
ePublicCommentRetrieve
eAccVerHistRetrieve
eIPGResolveRetrieve
eVDBOpen
eBacklog
eSNP_PTISLookup
eWGS_VDBLookup
eResolutionError
eResolutionNotFound
eResolutionFound
eBlobRetrieve
eNARetrieve
eTseChunkRetrieve
eNAResolve
eOperationLast

Definition at line 65 of file timing.hpp.

EPSGOperationStatus

enum EPSGOperationStatus

Enumerator
eOpStatusFound
eOpStatusNotFound

Definition at line 60 of file timing.hpp.

Function Documentation

SerializeHistogram()

CJsonNode SerializeHistogram	(	const TOnePSGTiming &	histogram,
		const string &	name,
		const string &	description,
		uint64_t	max_value
	)

Definition at line 58 of file timing.cpp.

References CJsonNode::Append(), CHistogram< TValue, TScale, TCounter >::GetBinCountersPtr(), CHistogram< TValue, TScale, TCounter >::GetBinStartsPtr(), CHistogram< TValue, TScale, TCounter >::GetCount(), CHistogram< TValue, TScale, TCounter >::GetLowerAnomalyCount(), CHistogram< TValue, TScale, TCounter >::GetMax(), CHistogram< TValue, TScale, TCounter >::GetNumberOfBins(), CHistogram< TValue, TScale, TCounter >::GetSum(), CHistogram< TValue, TScale, TCounter >::GetUpperAnomalyCount(), kBins(), kCount(), kDescription(), kEnd(), kLowerAnomaly(), kMaxValue(), kName(), kStart(), kTotalCount(), kUpperAnomaly(), kValueSum(), CJsonNode::NewArrayNode(), CJsonNode::NewObjectNode(), CJsonNode::SetByKey(), CJsonNode::SetInteger(), and CJsonNode::SetString().

Referenced by CPSGTimingBase::SerializeCombined(), and CPSGTimingBase::SerializeSeries().

Variable Documentation

kMaxStatValue

const unsigned long kMaxStatValue = 16 * 1024 * 1024

Definition at line 51 of file timing.hpp.

Referenced by CBlobRetrieveTiming::CBlobRetrieveTiming(), SPubseqGatewaySettings::Validate(), and SPubseqGatewaySettings::x_ReadStatisticsSection().

kMinStatValue

const unsigned long kMinStatValue = 0

Definition at line 50 of file timing.hpp.

Referenced by CBlobRetrieveTiming::CBlobRetrieveTiming(), SPubseqGatewaySettings::Validate(), and SPubseqGatewaySettings::x_ReadStatisticsSection().

kNStatBins

const unsigned long kNStatBins = 24

Definition at line 52 of file timing.hpp.

Referenced by CBlobRetrieveTiming::CBlobRetrieveTiming(), SPubseqGatewaySettings::Validate(), and SPubseqGatewaySettings::x_ReadStatisticsSection().

kStatScaleType

const string kStatScaleType = "log"

Definition at line 53 of file timing.hpp.

Referenced by SPubseqGatewaySettings::Validate(), and SPubseqGatewaySettings::x_ReadStatisticsSection().

kTickSpan

const unsigned long kTickSpan = 10

Definition at line 54 of file timing.hpp.

Referenced by SPubseqGatewaySettings::Validate(), and SPubseqGatewaySettings::x_ReadStatisticsSection().

USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 47 of file timing.hpp.