uniform_search.hpp File Reference

Uniform BLAST Search Interface. More...

#include <algo/blast/api/blast_types.hpp>
#include <algo/blast/api/blast_results.hpp>
#include <algo/blast/api/query_data.hpp>
#include <algo/blast/api/blast_options_handle.hpp>
#include <objtools/blast/seqdb_reader/seqdb.hpp>
#include <objtools/blast/seqdb_reader/seqdbcommon.hpp>

Include dependency graph for uniform_search.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Go to the SVN repository for this file.

Classes
class	CSearchException
	Exception class. More...
class	CSearchDatabase
	Blast Search Subject. More...
class	ISearch
	Single Iteration Blast Database Search. More...
class	ISeqSearch
	Single Iteration Search of Sequence(s) Against Blast Database(s) More...
class	IPssmSearch
	Experimental interface (since this does not provide a full interface to PSI-BLAST) More...
class	ISearchFactory
	Factory for ISearch. More...

Detailed Description

Uniform BLAST Search Interface.

NOTE: This file contains work in progress and the APIs are likely to change, please do not rely on them until this notice is removed.

Definition in file uniform_search.hpp.