unit_test_dbtag.cpp

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/*  $Id: unit_test_dbtag.cpp 98604 2022-12-12 12:25:31Z gotvyans $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * Author:  Eugene Vasilchenko, NCBI
 *
 * File Description:
 *   Unit test for CUser_object and CUser_field
 *
 * ===========================================================================
 */
 
#include <ncbi_pch.hpp>
 
//#include <objects/general/general__.hpp>
 
#include <corelib/ncbiapp.hpp>
#include <corelib/test_boost.hpp>
 
#include <util/util_exception.hpp>
 
#include <objects/general/Dbtag.hpp>
 
#include <common/test_assert.h>  /* This header must go last */
 
USING_NCBI_SCOPE;
USING_SCOPE(objects);
 
BOOST_AUTO_TEST_CASE(s_TestDBTag1)
{
    CDbtag::EDbtagType tag;
    string str;
    CDbtag::TDbtagGroup group;
 
    CDbtag dbtag1;
    dbtag1.SetDb("AAA");
    tag = dbtag1.GetType();
    BOOST_CHECK_EQUAL(tag, CDbtag::eDbtagType_bad);
 
    CDbtag dbtag2;
    dbtag2.SetDb("BioSample");
    tag = dbtag2.GetType();
    BOOST_CHECK_EQUAL(tag, CDbtag::eDbtagType_BioSample);
 
    CDbtag dbtag3;
    dbtag3.SetDb("BioSamplE"); // wrong case
    tag = dbtag3.GetType();
    BOOST_CHECK_EQUAL(tag, CDbtag::eDbtagType_bad);
 
    BOOST_CHECK(!dbtag2.IsApproved());
    BOOST_CHECK(dbtag2.IsApproved(CDbtag::eIsRefseq_Yes));
    BOOST_CHECK(!dbtag3.IsApproved());
    BOOST_CHECK(dbtag3.IsApprovedNoCase(CDbtag::eIsRefseq_Yes));
 
    group = dbtag2.GetDBFlags(str);
    BOOST_CHECK_EQUAL(str, "BioSample");
    BOOST_CHECK_EQUAL(group, CDbtag::fRefSeq);
 
    group = dbtag3.GetDBFlags(str);
    BOOST_CHECK_EQUAL(str, "BioSample");
    BOOST_CHECK_EQUAL(group, CDbtag::fRefSeq);
}
 
BOOST_AUTO_TEST_CASE(s_TestDBTag2)
{
    CDbtag::EDbtagType tag;
    string str;
    CDbtag::TDbtagGroup group;
 
    {
    CDbtag dbtag;
    dbtag.SetDb("Ensembl");
    tag = dbtag.GetType();
    BOOST_CHECK_EQUAL(tag, CDbtag::eDbtagType_Ensembl);
    }
 
    {
    CDbtag dbtag;
    dbtag.SetDb("ENSEMBL");
    tag = dbtag.GetType();
    BOOST_CHECK_EQUAL(tag, CDbtag::eDbtagType_Ensembl);
    }
 
    {
    CDbtag dbtag;
    dbtag.SetDb("EnsembL");
    tag = dbtag.GetType();
    BOOST_CHECK_EQUAL(tag, CDbtag::eDbtagType_bad);
    BOOST_CHECK(!dbtag.IsApproved());
    BOOST_CHECK(dbtag.IsApprovedNoCase());
 
    group = dbtag.GetDBFlags(str);
    BOOST_CHECK_EQUAL(str, "Ensembl");
    BOOST_CHECK_EQUAL(group, CDbtag::fGenBank);
    }
 
    {
    CDbtag dbtag;
    dbtag.SetDb("ENSEMBL");
    tag = dbtag.GetType();
    BOOST_CHECK_EQUAL(tag, CDbtag::eDbtagType_Ensembl);
    BOOST_CHECK(dbtag.IsApproved());
    BOOST_CHECK(dbtag.IsApprovedNoCase());
 
    group = dbtag.GetDBFlags(str);
    BOOST_CHECK_EQUAL(str, "ENSEMBL");
    BOOST_CHECK_EQUAL(group, CDbtag::fGenBank);
    }
 
    {
    CDbtag dbtag;
    dbtag.SetDb("ENSEMBL");
    tag = dbtag.GetType();
    BOOST_CHECK( dbtag.IsApproved(CDbtag::eIsRefseq_No));
    BOOST_CHECK(!dbtag.IsApproved(CDbtag::eIsRefseq_No, CDbtag::eIsSource_Yes));
    BOOST_CHECK(!dbtag.IsApproved(CDbtag::eIsRefseq_No, CDbtag::eIsSource_Yes, CDbtag::eIsEstOrGss_No));
    BOOST_CHECK( dbtag.IsApproved(CDbtag::eIsRefseq_No, CDbtag::eIsSource_Yes, CDbtag::eIsEstOrGss_Yes));
    }
}