NCBI C++ ToolKit
Functions | Variables
unit_test_fasta_ostream.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/ncbi_system.hpp>
#include <corelib/test_boost.hpp>
#include <corelib/ncbi_autoinit.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/bioseq_ci.hpp>
#include <objmgr/feat_ci.hpp>
#include <objmgr/seq_vector.hpp>
#include <objmgr/util/sequence.hpp>
#include <objects/seq/seqport_util.hpp>
#include <objects/seq/Seq_inst.hpp>
#include <objects/seq/Seq_ext.hpp>
#include <objects/seq/Seq_gap.hpp>
#include <objects/seq/Seq_literal.hpp>
#include <objects/seq/Delta_seq.hpp>
#include <objects/seq/Delta_ext.hpp>
#include <objects/seq/IUPACna.hpp>
#include <objects/seq/Linkage_evidence.hpp>
+ Include dependency graph for unit_test_fasta_ostream.cpp:

Go to the source code of this file.

Go to the SVN repository for this file.

Functions

 USING_SCOPE (objects)
 
CRef< CSeq_entrys_ReadData ()
 
 BOOST_AUTO_TEST_CASE (Test_FastaRaw)
 
 BOOST_AUTO_TEST_CASE (Test_FastaGap)
 
 BOOST_AUTO_TEST_CASE (Test_FastaMask_SimpleSoft)
 
 BOOST_AUTO_TEST_CASE (Test_FastaMask_SimpleHard)
 
 BOOST_AUTO_TEST_CASE (Test_FastaMask_ComplexSoft)
 
 BOOST_AUTO_TEST_CASE (Test_FastaMask_ComplexSoftHard)
 
 BOOST_AUTO_TEST_CASE (Test_FastaMask_SoftHardSimpleOverlap)
 
 BOOST_AUTO_TEST_CASE (Test_FastaMods)
 
 BOOST_AUTO_TEST_CASE (Test_GapMods)
 
 BOOST_AUTO_TEST_CASE (Test_OverlappingLocation)
 
 BOOST_AUTO_TEST_CASE (Test_LocationMitochondrion)
 

Variables

 USING_NCBI_SCOPE
 
const string sc_TestEntry
 

Function Documentation

◆ BOOST_AUTO_TEST_CASE() [1/11]

BOOST_AUTO_TEST_CASE ( Test_FastaGap  )

◆ BOOST_AUTO_TEST_CASE() [2/11]

BOOST_AUTO_TEST_CASE ( Test_FastaMask_ComplexSoft  )

◆ BOOST_AUTO_TEST_CASE() [3/11]

BOOST_AUTO_TEST_CASE ( Test_FastaMask_ComplexSoftHard  )

◆ BOOST_AUTO_TEST_CASE() [4/11]

BOOST_AUTO_TEST_CASE ( Test_FastaMask_SimpleHard  )

◆ BOOST_AUTO_TEST_CASE() [5/11]

BOOST_AUTO_TEST_CASE ( Test_FastaMask_SimpleSoft  )

◆ BOOST_AUTO_TEST_CASE() [6/11]

BOOST_AUTO_TEST_CASE ( Test_FastaMask_SoftHardSimpleOverlap  )

◆ BOOST_AUTO_TEST_CASE() [7/11]

BOOST_AUTO_TEST_CASE ( Test_FastaMods  )

◆ BOOST_AUTO_TEST_CASE() [8/11]

BOOST_AUTO_TEST_CASE ( Test_FastaRaw  )

◆ BOOST_AUTO_TEST_CASE() [9/11]

BOOST_AUTO_TEST_CASE ( Test_GapMods  )

◆ BOOST_AUTO_TEST_CASE() [10/11]

BOOST_AUTO_TEST_CASE ( Test_LocationMitochondrion  )

◆ BOOST_AUTO_TEST_CASE() [11/11]

BOOST_AUTO_TEST_CASE ( Test_OverlappingLocation  )

◆ s_ReadData()

CRef<CSeq_entry> s_ReadData ( )

◆ USING_SCOPE()

USING_SCOPE ( objects  )

Variable Documentation

◆ sc_TestEntry

const string sc_TestEntry

Definition at line 714 of file unit_test_fasta_ostream.cpp.

Referenced by s_ReadData().

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 76 of file unit_test_fasta_ostream.cpp.

Modified on Sun Apr 14 05:25:42 2024 by modify_doxy.py rev. 669887