unit_test_feature_edit.cpp File Reference

#include <ncbi_pch.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/mapped_feat.hpp>
#include <objmgr/seq_feat_handle.hpp>
#include <objmgr/util/feature_edit.hpp>
#include <corelib/ncbi_system.hpp>
#include <corelib/ncbifile.hpp>
#include <objects/seqfeat/Seq_feat.hpp>
#include <objects/seq/Seq_annot.hpp>
#include <corelib/test_boost.hpp>
#include <common/test_assert.h>

Include dependency graph for unit_test_feature_edit.cpp:

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Classes
struct	STestInfo
class	CTestNameToInfoMapLoader

Typedefs
using	TTestName = string
using	TTestNameToInfoMap = map< TTestName, STestInfo >

Functions
	USING_SCOPE (objects)
CRef< CSeq_feat >	s_ReadFeat (const string &filename)
bool	s_AreFeatsEqual (const CSeq_feat &feat1, const CSeq_feat &feat2)
CRange< TSeqPos >	s_GetRangeFromString (const string &rangeString)
void	sRunFeatureTrimTest (const string &testName, const STestInfo &testInfo, const bool keep)
const string	dirTestFiles ("feature_edit_test_cases")
	NCBITEST_AUTO_INIT ()
	NCBITEST_INIT_CMDLINE (arg_descrs)
	NCBITEST_AUTO_FINI ()
	BOOST_AUTO_TEST_CASE (RunTests)

Variables
	USING_NCBI_SCOPE
CRef< CScope >	s_pScope

Typedef Documentation

TTestName

using TTestName = string

Definition at line 79 of file unit_test_feature_edit.cpp.

TTestNameToInfoMap

using TTestNameToInfoMap = map<TTestName, STestInfo>

Definition at line 80 of file unit_test_feature_edit.cpp.

Function Documentation

BOOST_AUTO_TEST_CASE()

BOOST_AUTO_TEST_CASE

(

RunTests

)

Definition at line 214 of file unit_test_feature_edit.cpp.

References CFile::Exists(), extInput(), fFF_Default, fFF_Recursive, FindFilesInDir(), CNcbiApplicationAPI::GetArgs(), CDirEntry::GetPath(), CNcbiApplication::Instance(), CDirEntry::IsDir(), ITERATE, STestInfo::m_BaselineFile, STestInfo::m_InFile, and sRunFeatureTrimTest().

dirTestFiles()

const string dirTestFiles

(

"feature_edit_test_cases"

)

Referenced by NCBITEST_INIT_CMDLINE().

NCBITEST_AUTO_FINI()

NCBITEST_AUTO_FINI

(

)

Definition at line 209 of file unit_test_feature_edit.cpp.

NCBITEST_AUTO_INIT()

NCBITEST_AUTO_INIT

(

)

Definition at line 190 of file unit_test_feature_edit.cpp.

References CObjectManager::GetInstance(), Ref(), and s_pScope.

NCBITEST_INIT_CMDLINE()

NCBITEST_INIT_CMDLINE

(

arg_descrs

)

Definition at line 196 of file unit_test_feature_edit.cpp.

References dirTestFiles(), and CArgDescriptions::eDirectory.

s_AreFeatsEqual()

bool s_AreFeatsEqual	(	const CSeq_feat &	feat1,
		const CSeq_feat &	feat2
	)

Definition at line 66 of file unit_test_feature_edit.cpp.

References CSerialObject::Equals().

s_GetRangeFromString()

CRange<TSeqPos> s_GetRangeFromString

(

const string &

rangeString

)

Definition at line 85 of file unit_test_feature_edit.cpp.

References NStr::Split(), and NStr::StringToInt().

Referenced by CTestNameToInfoMapLoader::operator()().

s_ReadFeat()

CRef<CSeq_feat> s_ReadFeat

(

const string &

filename

)

Definition at line 56 of file unit_test_feature_edit.cpp.

References MSerial_AsnText.

Referenced by sRunFeatureTrimTest().

sRunFeatureTrimTest()

void sRunFeatureTrimTest	(	const string &	testName,
		const STestInfo &	testInfo,
		const bool	keep
	)

Definition at line 161 of file unit_test_feature_edit.cpp.

References CSerialObject::Equals(), CDirEntry::GetPath(), STestInfo::m_BaselineFile, STestInfo::m_InFile, STestInfo::m_Range, MSerial_AsnText, and s_ReadFeat().

Referenced by BOOST_AUTO_TEST_CASE().

USING_SCOPE()

USING_SCOPE

(

objects

)

Variable Documentation

s_pScope

CRef<CScope> s_pScope

Definition at line 83 of file unit_test_feature_edit.cpp.

Referenced by BOOST_AUTO_TEST_CASE(), and NCBITEST_AUTO_INIT().

USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 53 of file unit_test_feature_edit.cpp.