#include <ncbi_pch.hpp>#include <objmgr/scope.hpp>#include <objmgr/object_manager.hpp>#include <objmgr/bioseq_ci.hpp>#include <objmgr/util/sequence.hpp>#include <corelib/test_boost.hpp>#include <gui/packages/pkg_sequence_edit/import_feat_table.hpp>#include <objtools/unit_test_util/unit_test_util.hpp>
Include dependency graph for unit_test_import_feattable.cpp:
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Functions | |
| USING_SCOPE (objects) | |
| NCBITEST_AUTO_INIT () | |
| NCBITEST_AUTO_FINI () | |
| CRef< CSeq_entry > | ReadEntryFromFile (const string &fname) |
| CRef< CSeq_annot > | ReadAnnotFromFile (const string &fname) |
| template<class T > | |
| string | MakeAsn (const T &object) |
| void | DoImportFTable (CSeq_entry_Handle &seh, const CSeq_annot &annot) |
| void | ImportFeatTblTesting (const string &entry_file, const string &annot_file, const string &output_file) |
| BOOST_AUTO_TEST_CASE (Test_GB_7376) | |
| BOOST_AUTO_TEST_CASE (Test_GB_7453) | |
| BOOST_AUTO_TEST_CASE (Test_GB_7668) | |
| BOOST_AUTO_TEST_CASE (Test_GB_7030) | |
| BOOST_AUTO_TEST_CASE (Test_GB_8265) | |
| BOOST_AUTO_TEST_CASE (Test_GB_8871) | |
| BOOST_AUTO_TEST_CASE (Test_GB_8922) | |
| BOOST_AUTO_TEST_CASE (Test_GB_8265_withoutproteinid) | |
| BOOST_AUTO_TEST_CASE (Test_GB_8265_pseudocds) | |
| BOOST_AUTO_TEST_CASE (Test_GB_9054) | |
Variables | |
| USING_NCBI_SCOPE | |
Function Documentation
◆ BOOST_AUTO_TEST_CASE() [1/10]
| BOOST_AUTO_TEST_CASE | ( | Test_GB_7030 | ) |
Definition at line 155 of file unit_test_import_feattable.cpp.
References ImportFeatTblTesting().
◆ BOOST_AUTO_TEST_CASE() [2/10]
| BOOST_AUTO_TEST_CASE | ( | Test_GB_7376 | ) |
Definition at line 137 of file unit_test_import_feattable.cpp.
References ImportFeatTblTesting().
◆ BOOST_AUTO_TEST_CASE() [3/10]
| BOOST_AUTO_TEST_CASE | ( | Test_GB_7453 | ) |
Definition at line 143 of file unit_test_import_feattable.cpp.
References ImportFeatTblTesting().
◆ BOOST_AUTO_TEST_CASE() [4/10]
| BOOST_AUTO_TEST_CASE | ( | Test_GB_7668 | ) |
Definition at line 149 of file unit_test_import_feattable.cpp.
References ImportFeatTblTesting().
◆ BOOST_AUTO_TEST_CASE() [5/10]
| BOOST_AUTO_TEST_CASE | ( | Test_GB_8265 | ) |
Definition at line 160 of file unit_test_import_feattable.cpp.
References ImportFeatTblTesting().
◆ BOOST_AUTO_TEST_CASE() [6/10]
| BOOST_AUTO_TEST_CASE | ( | Test_GB_8265_pseudocds | ) |
Definition at line 180 of file unit_test_import_feattable.cpp.
References ImportFeatTblTesting().
◆ BOOST_AUTO_TEST_CASE() [7/10]
| BOOST_AUTO_TEST_CASE | ( | Test_GB_8265_withoutproteinid | ) |
Definition at line 175 of file unit_test_import_feattable.cpp.
References ImportFeatTblTesting().
◆ BOOST_AUTO_TEST_CASE() [8/10]
| BOOST_AUTO_TEST_CASE | ( | Test_GB_8871 | ) |
Definition at line 165 of file unit_test_import_feattable.cpp.
References ImportFeatTblTesting().
◆ BOOST_AUTO_TEST_CASE() [9/10]
| BOOST_AUTO_TEST_CASE | ( | Test_GB_8922 | ) |
Definition at line 170 of file unit_test_import_feattable.cpp.
References ImportFeatTblTesting().
◆ BOOST_AUTO_TEST_CASE() [10/10]
| BOOST_AUTO_TEST_CASE | ( | Test_GB_9054 | ) |
Definition at line 185 of file unit_test_import_feattable.cpp.
References ImportFeatTblTesting().
◆ DoImportFTable()
| void DoImportFTable | ( | CSeq_entry_Handle & | seh, |
| const CSeq_annot & | annot | ||
| ) |
Definition at line 94 of file unit_test_import_feattable.cpp.
References cmd, eGetId_Seq_id_BestRank, CSeq_inst_Base::eMol_na, CSeq_annot_Base::GetData(), CSeq_annot_Base::C_Data::GetFtable(), CSeq_id_Handle::GetHandle(), GetId(), CSeq_loc::GetId(), and CImportFeatTable::TestImport().
Referenced by ImportFeatTblTesting().
◆ ImportFeatTblTesting()
| void ImportFeatTblTesting | ( | const string & | entry_file, |
| const string & | annot_file, | ||
| const string & | output_file | ||
| ) |
Definition at line 117 of file unit_test_import_feattable.cpp.
References CScope::AddDefaults(), CScope::AddTopLevelSeqEntry(), DoImportFTable(), CSeq_entry_Handle::GetCompleteSeq_entry(), CObjectManager::GetInstance(), MakeAsn(), output, ReadAnnotFromFile(), and ReadEntryFromFile().
Referenced by BOOST_AUTO_TEST_CASE().
◆ MakeAsn()
Definition at line 86 of file unit_test_import_feattable.cpp.
References MSerial_AsnText, and str().
Referenced by ImportFeatTblTesting().
◆ NCBITEST_AUTO_FINI()
| NCBITEST_AUTO_FINI | ( | ) |
Definition at line 50 of file unit_test_import_feattable.cpp.
◆ NCBITEST_AUTO_INIT()
| NCBITEST_AUTO_INIT | ( | ) |
Definition at line 46 of file unit_test_import_feattable.cpp.
◆ ReadAnnotFromFile()
| CRef<CSeq_annot> ReadAnnotFromFile | ( | const string & | fname | ) |
Definition at line 70 of file unit_test_import_feattable.cpp.
References Error(), eSerial_AsnText, LOG_POST, CObjectIStream::Open(), and CException::ReportAll().
Referenced by ImportFeatTblTesting().
◆ ReadEntryFromFile()
| CRef<CSeq_entry> ReadEntryFromFile | ( | const string & | fname | ) |
Definition at line 54 of file unit_test_import_feattable.cpp.
References Error(), eSerial_AsnText, LOG_POST, CObjectIStream::Open(), and CException::ReportAll().
Referenced by ImportFeatTblTesting().
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
Variable Documentation
◆ USING_NCBI_SCOPE
| USING_NCBI_SCOPE |
Definition at line 43 of file unit_test_import_feattable.cpp.
