#include <ncbi_pch.hpp>#include <corelib/ncbiapp.hpp>#include <corelib/ncbiargs.hpp>#include <corelib/ncbienv.hpp>#include <corelib/test_boost.hpp>#include <objtools/data_loaders/genbank/gbloader.hpp>#include <objmgr/object_manager.hpp>#include <objmgr/scope.hpp>#include <objmgr/seq_vector.hpp>#include <objmgr/feat_ci.hpp>#include <serial/serial.hpp>#include <serial/objistr.hpp>#include <serial/objostr.hpp>#include <objects/seq/Annot_descr.hpp>#include <objects/seq/Annotdesc.hpp>#include <objects/seq/Bioseq.hpp>#include <objects/seqset/Seq_entry.hpp>#include <objects/seqfeat/Genetic_code_table.hpp>#include <objects/seqfeat/Org_ref.hpp>#include <algo/sequence/orf.hpp>#include <objmgr/util/sequence.hpp>
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Functions | |
| USING_SCOPE (objects) | |
| NCBITEST_AUTO_INIT () | |
| NCBITEST_INIT_CMDLINE (arg_desc) | |
| BOOST_AUTO_TEST_CASE (TestUsingArg) | |
| BOOST_AUTO_TEST_CASE (tiny_islands) | |
| BOOST_AUTO_TEST_CASE (first_n) | |
| BOOST_AUTO_TEST_CASE (short_n) | |
Variables | |
| USING_NCBI_SCOPE | |
Function Documentation
◆ BOOST_AUTO_TEST_CASE() [1/4]
| BOOST_AUTO_TEST_CASE | ( | first_n | ) |
Definition at line 156 of file unit_test_orf.cpp.
References eExtreme_Positional, and COrf::FindOrfs().
◆ BOOST_AUTO_TEST_CASE() [2/4]
| BOOST_AUTO_TEST_CASE | ( | short_n | ) |
Definition at line 175 of file unit_test_orf.cpp.
References a, eExtreme_Biological, and COrf::FindOrfs().
◆ BOOST_AUTO_TEST_CASE() [3/4]
| BOOST_AUTO_TEST_CASE | ( | TestUsingArg | ) |
Definition at line 83 of file unit_test_orf.cpp.
References CScope::AddDefaults(), CSerialObject::Equals(), COrf::FindOrfs(), NStr::fSplit_Tokenize, CAnnot_descr_Base::Get(), CNcbiApplicationAPI::GetArgs(), CScope::GetBioseqHandle(), CSeq_annot_Base::GetData(), CSeq_annot_Base::GetDesc(), CSeq_annot_Base::C_Data::GetFtable(), COrg_ref::GetGcode(), CObjectManager::GetInstance(), GetOrg_ref(), CNcbiApplication::Instance(), COrg_ref::IsSetGcode(), COrf::MakeCDSAnnot(), MSerial_AsnText, NULL, om, CSeq_annot_Base::SetDesc(), and NStr::Split().
◆ BOOST_AUTO_TEST_CASE() [4/4]
| BOOST_AUTO_TEST_CASE | ( | tiny_islands | ) |
Definition at line 143 of file unit_test_orf.cpp.
References COrf::FindOrfs().
◆ NCBITEST_AUTO_INIT()
| NCBITEST_AUTO_INIT | ( | ) |
Definition at line 65 of file unit_test_orf.cpp.
References CObjectManager::GetInstance(), om, and CGBDataLoader::RegisterInObjectManager().
◆ NCBITEST_INIT_CMDLINE()
| NCBITEST_INIT_CMDLINE | ( | arg_desc | ) |
Definition at line 72 of file unit_test_orf.cpp.
References CArgDescriptions::eInputFile, and CArgDescriptions::eOutputFile.
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
Variable Documentation
◆ USING_NCBI_SCOPE
| USING_NCBI_SCOPE |
Definition at line 61 of file unit_test_orf.cpp.
