NCBI C++ ToolKit
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#include <ncbi_pch.hpp>
#include <corelib/ncbiapp.hpp>
#include <corelib/test_boost.hpp>
#include <serial/serial.hpp>
#include <serial/objistr.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/general/Object_id.hpp>
#include <objtools/alnmgr/aln_user_options.hpp>
#include <objtools/alnmgr/aln_asn_reader.hpp>
#include <objtools/alnmgr/aln_container.hpp>
#include <objtools/alnmgr/aln_tests.hpp>
#include <objtools/alnmgr/aln_stats.hpp>
#include <objtools/alnmgr/pairwise_aln.hpp>
#include <objtools/alnmgr/aln_serial.hpp>
#include <objtools/alnmgr/sparse_aln.hpp>
#include <objtools/alnmgr/aln_converters.hpp>
#include <objtools/alnmgr/aln_builders.hpp>
#include <objtools/alnmgr/sparse_ci.hpp>
#include <objtools/alnmgr/aln_generators.hpp>
#include <objtools/alnmgr/score_builder_base.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/scope.hpp>
#include <common/test_assert.h>
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Functions | |
USING_SCOPE (objects) | |
NCBITEST_INIT_CMDLINE (descrs) | |
bool | DumpExpected (void) |
CRef< CScope > | GetScope (void) |
size_t | LoadAligns (CNcbiIstream &in, CAlnContainer &aligns, size_t limit=0) |
BOOST_AUTO_TEST_CASE (TestAltStartIdentity) | |
Variables | |
USING_NCBI_SCOPE | |
BOOST_AUTO_TEST_CASE | ( | TestAltStartIdentity | ) |
Definition at line 121 of file unit_test_score_builder.cpp.
References CScoreBuilderBase::AddScore(), buf, DBL_EPSILON, CSeq_align::eScore_IdentityCount, CSeq_align::eScore_MismatchCount, CSeq_align::eScore_PercentIdentity_Gapped, eSerial_AsnText, CSeq_align::GetNamedScore(), GetScope(), CObjectIStream::Open(), CSeq_align::Validate(), and rapidjson::value.
bool DumpExpected | ( | void | ) |
Definition at line 75 of file unit_test_score_builder.cpp.
References CNcbiApplicationAPI::GetArgs(), and CNcbiApplication::Instance().
Definition at line 81 of file unit_test_score_builder.cpp.
References CScope::AddDefaults(), CObjectManager::GetInstance(), CGBDataLoader::RegisterInObjectManager(), and s_Initialized.
Referenced by BOOST_AUTO_TEST_CASE().
size_t LoadAligns | ( | CNcbiIstream & | in, |
CAlnContainer & | aligns, | ||
size_t | limit = 0 |
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) |
Definition at line 99 of file unit_test_score_builder.cpp.
References in(), CAlnContainer::insert(), MSerial_AsnText, and CSeq_align::Validate().
NCBITEST_INIT_CMDLINE | ( | descrs | ) |
Definition at line 69 of file unit_test_score_builder.cpp.
USING_SCOPE | ( | objects | ) |
USING_NCBI_SCOPE |
Definition at line 64 of file unit_test_score_builder.cpp.