#include <ncbi_pch.hpp>
#include <corelib/ncbi_system.hpp>
#include <corelib/test_boost.hpp>
#include <objects/seqloc/seqloc__.hpp>
#include <objects/general/general__.hpp>
#include <objects/seqfeat/Feat_id.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/util/seq_loc_util.hpp>
#include <objmgr/util/sequence.hpp>
#include <objmgr/seq_vector.hpp>
#include <objects/misc/sequence_macros.hpp>

Include dependency graph for unit_test_seq_loc_over.cpp:

Go to the SVN repository for this file.

Macros
#define	NCBI_TEST_APPLICATION

Functions
	USING_SCOPE (objects)

	USING_SCOPE (sequence)

CScope &	GetScope ()

CRef< CSeq_loc >	MakeBond (TGi giA, TSeqPos posA, TGi giB=ZERO_GI, TSeqPos posB=0)

CRef< CSeq_loc >	MakeInterval (TGi gi, TSeqPos from, TSeqPos to, ENa_strand strand=eNa_strand_unknown)

CRef< CSeq_loc >	MakeInterval (CRef< CSeq_id > id, TSeqPos from, TSeqPos to, ENa_strand strand=eNa_strand_unknown)

CRef< CSeq_loc >	MakePoint (TGi gi, TSeqPos pos)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap1)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap2)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap3)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap4)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap5)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap6)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap7)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap8)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap9)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap10)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap11)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap12)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap13)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap14)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap15)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap16)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap17)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multiseq1)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multiseq2)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multiseq3)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multiseq4)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multiseq5)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multiseq6)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multiseq7)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multiseq8)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multiseq9)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand1)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand2)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand3)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand4)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand5)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand6)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand7)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand8)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand9)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand10)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand11)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand12)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand13)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap_Multistrand14)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular1)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular2)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular3)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular4)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular5)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular6)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular7)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular8)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular9)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular10)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular11)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular12)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular13)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular14)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular15)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular16)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular17)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlap64_Circular18)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular1)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular2)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular3)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular4)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular5)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular6)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular7)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular8)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular9)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular10)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular11)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular12)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular13)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular14)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular15)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular16)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular17)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular18)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular19)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular20)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular21)

	BOOST_AUTO_TEST_CASE (Test_TestForOverlapEx_Circular22)

Variables
	USING_NCBI_SCOPE

const char *	sc_TestEntry

Macro Definition Documentation

◆ NCBI_TEST_APPLICATION

#define NCBI_TEST_APPLICATION

Definition at line 33 of file unit_test_seq_loc_over.cpp.

Function Documentation

◆ BOOST_AUTO_TEST_CASE() [1/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap1 )

Definition at line 138 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [2/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap10 )

Definition at line 417 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [3/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap11 )

Definition at line 449 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [4/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap12 )

Definition at line 483 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [5/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap13 )

Definition at line 517 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [6/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap14 )

Definition at line 551 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [7/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap15 )

Definition at line 585 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [8/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap16 )

Definition at line 619 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [9/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap17 )

Definition at line 654 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [10/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap2 )

Definition at line 167 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [11/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap3 )

Definition at line 197 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [12/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap4 )

Definition at line 227 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [13/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap5 )

Definition at line 257 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [14/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap6 )

Definition at line 289 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [15/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular1 )

Definition at line 1564 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [16/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular10 )

Definition at line 1998 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [17/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular11 )

Definition at line 2047 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [18/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular12 )

Definition at line 2097 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [19/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular13 )

Definition at line 2146 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [20/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular14 )

Definition at line 2198 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [21/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular15 )

Definition at line 2248 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [22/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular16 )

Definition at line 2296 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [23/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular17 )

Definition at line 2344 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [24/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular18 )

Definition at line 2393 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [25/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular2 )

Definition at line 1611 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [26/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular3 )

Definition at line 1659 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [27/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular4 )

Definition at line 1707 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [28/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular5 )

Definition at line 1755 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [29/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular6 )

Definition at line 1803 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [30/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular7 )

Definition at line 1851 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [31/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular8 )

Definition at line 1900 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [32/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap64_Circular9 )

Definition at line 1949 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlap64().

◆ BOOST_AUTO_TEST_CASE() [33/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap7 )

Definition at line 320 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [34/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap8 )

Definition at line 352 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [35/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap9 )

Definition at line 385 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [36/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multiseq1 )

Definition at line 690 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, fOverlap_NoMultiSeq, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), TestForOverlap64(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [37/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multiseq2 )

Definition at line 735 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [38/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multiseq3 )

Definition at line 782 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eNa_strand_plus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [39/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multiseq4 )

Definition at line 823 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [40/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multiseq5 )

Definition at line 866 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eNa_strand_plus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [41/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multiseq6 )

Definition at line 909 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [42/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multiseq7 )

Definition at line 950 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eNa_strand_plus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [43/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multiseq8 )

Definition at line 991 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [44/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multiseq9 )

Definition at line 1036 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_id_Base::SetLocal(), CSeq_loc::SetMix(), CObject_id_Base::SetStr(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [45/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand1 )

Definition at line 1081 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eNa_strand_plus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [46/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand10 )

Definition at line 1388 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [47/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand11 )

Definition at line 1424 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [48/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand12 )

Definition at line 1461 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [49/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand13 )

Definition at line 1495 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [50/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand14 )

Definition at line 1530 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [51/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand2 )

Definition at line 1103 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eNa_strand_plus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [52/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand3 )

Definition at line 1135 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eNa_strand_plus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [53/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand4 )

Definition at line 1167 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eNa_strand_plus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [54/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand5 )

Definition at line 1203 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eNa_strand_plus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, fOverlap_NoMultiStrand, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [55/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand6 )

Definition at line 1244 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eNa_strand_plus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [56/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand7 )

Definition at line 1280 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eNa_strand_plus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [57/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand8 )

Definition at line 1316 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eNa_strand_plus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [58/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlap_Multistrand9 )

Definition at line 1352 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [59/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular1 )

Definition at line 2442 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [60/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular10 )

Definition at line 2731 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [61/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular11 )

Definition at line 2763 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [62/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular12 )

Definition at line 2796 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [63/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular13 )

Definition at line 2828 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [64/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular14 )

Definition at line 2862 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [65/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular15 )

Definition at line 2894 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [66/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular16 )

Definition at line 2925 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [67/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular17 )

Definition at line 2957 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [68/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular18 )

Definition at line 2989 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [69/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular19 )

Definition at line 3021 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [70/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular2 )

Definition at line 2473 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [71/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular20 )

Definition at line 3056 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [72/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular21 )

Definition at line 3090 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [73/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular22 )

Definition at line 3124 of file unit_test_seq_loc_over.cpp.

References eNa_strand_minus, eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [74/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular3 )

Definition at line 2504 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [75/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular4 )

Definition at line 2535 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [76/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular5 )

Definition at line 2566 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [77/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular6 )

Definition at line 2597 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [78/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular7 )

Definition at line 2629 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [79/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular8 )

Definition at line 2661 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, fOverlap_IgnoreTopology, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ BOOST_AUTO_TEST_CASE() [80/80]

BOOST_AUTO_TEST_CASE ( Test_TestForOverlapEx_Circular9 )

Definition at line 2699 of file unit_test_seq_loc_over.cpp.

References eOverlap_CheckIntervals, eOverlap_CheckIntRev, eOverlap_Contained, eOverlap_Contains, eOverlap_Interval, eOverlap_Simple, eOverlap_Subset, eOverlap_SubsetRev, GetScope(), MakeInterval(), CSeq_loc::SetMix(), and TestForOverlapEx().

◆ GetScope()

CScope& GetScope ( void )

Definition at line 70 of file unit_test_seq_loc_over.cpp.

References CScope::AddTopLevelSeqEntry(), CObjectManager::GetInstance(), MSerial_AsnText, CRef< C, Locker >::Reset(), and sc_TestEntry.

Referenced by BOOST_AUTO_TEST_CASE().

◆ MakeBond()

CRef<CSeq_loc> MakeBond	(	TGi	giA,
		TSeqPos	posA,
		TGi	giB = `ZERO_GI`,
		TSeqPos	posB = `0`
	)

Definition at line 84 of file unit_test_seq_loc_over.cpp.

References CSeq_loc::SetBond().

◆ MakeInterval() [1/2]

CRef<CSeq_loc> MakeInterval	(	CRef< CSeq_id >	id,
		TSeqPos	from,
		TSeqPos	to,
		ENa_strand	strand = `eNa_strand_unknown`
	)

Definition at line 113 of file unit_test_seq_loc_over.cpp.

References eNa_strand_unknown, and CSeq_loc::SetInt().

◆ MakeInterval() [2/2]

CRef<CSeq_loc> MakeInterval	(	TGi	gi,
		TSeqPos	from,
		TSeqPos	to,
		ENa_strand	strand = `eNa_strand_unknown`
	)

Definition at line 97 of file unit_test_seq_loc_over.cpp.

References eNa_strand_unknown, and CSeq_loc::SetInt().

Referenced by BOOST_AUTO_TEST_CASE().

◆ MakePoint()

CRef<CSeq_loc> MakePoint	(	TGi	gi,
		TSeqPos	pos
	)

Definition at line 129 of file unit_test_seq_loc_over.cpp.

References CSeq_loc::SetPnt().

◆ USING_SCOPE() [1/2]

USING_SCOPE ( objects )

◆ USING_SCOPE() [2/2]

USING_SCOPE ( sequence )

Variable Documentation

◆ sc_TestEntry

const char* sc_TestEntry

Definition at line 3176 of file unit_test_seq_loc_over.cpp.

Referenced by GetScope().

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 63 of file unit_test_seq_loc_over.cpp.

Macros

Functions

Variables

Macro Definition Documentation

◆ NCBI_TEST_APPLICATION

Function Documentation

◆ BOOST_AUTO_TEST_CASE() [1/80]

◆ BOOST_AUTO_TEST_CASE() [2/80]

◆ BOOST_AUTO_TEST_CASE() [3/80]

◆ BOOST_AUTO_TEST_CASE() [4/80]

◆ BOOST_AUTO_TEST_CASE() [5/80]

◆ BOOST_AUTO_TEST_CASE() [6/80]

◆ BOOST_AUTO_TEST_CASE() [7/80]

◆ BOOST_AUTO_TEST_CASE() [8/80]

◆ BOOST_AUTO_TEST_CASE() [9/80]

◆ BOOST_AUTO_TEST_CASE() [10/80]

◆ BOOST_AUTO_TEST_CASE() [11/80]

◆ BOOST_AUTO_TEST_CASE() [12/80]

◆ BOOST_AUTO_TEST_CASE() [13/80]

◆ BOOST_AUTO_TEST_CASE() [14/80]

◆ BOOST_AUTO_TEST_CASE() [15/80]

◆ BOOST_AUTO_TEST_CASE() [16/80]

◆ BOOST_AUTO_TEST_CASE() [17/80]

◆ BOOST_AUTO_TEST_CASE() [18/80]

◆ BOOST_AUTO_TEST_CASE() [19/80]

◆ BOOST_AUTO_TEST_CASE() [20/80]

◆ BOOST_AUTO_TEST_CASE() [21/80]

◆ BOOST_AUTO_TEST_CASE() [22/80]

◆ BOOST_AUTO_TEST_CASE() [23/80]

◆ BOOST_AUTO_TEST_CASE() [24/80]

◆ BOOST_AUTO_TEST_CASE() [25/80]

◆ BOOST_AUTO_TEST_CASE() [26/80]

◆ BOOST_AUTO_TEST_CASE() [27/80]

◆ BOOST_AUTO_TEST_CASE() [28/80]

◆ BOOST_AUTO_TEST_CASE() [29/80]

◆ BOOST_AUTO_TEST_CASE() [30/80]

◆ BOOST_AUTO_TEST_CASE() [31/80]

◆ BOOST_AUTO_TEST_CASE() [32/80]

◆ BOOST_AUTO_TEST_CASE() [33/80]

◆ BOOST_AUTO_TEST_CASE() [34/80]

◆ BOOST_AUTO_TEST_CASE() [35/80]

◆ BOOST_AUTO_TEST_CASE() [36/80]

◆ BOOST_AUTO_TEST_CASE() [37/80]

◆ BOOST_AUTO_TEST_CASE() [38/80]

◆ BOOST_AUTO_TEST_CASE() [39/80]

◆ BOOST_AUTO_TEST_CASE() [40/80]

◆ BOOST_AUTO_TEST_CASE() [41/80]

◆ BOOST_AUTO_TEST_CASE() [42/80]

◆ BOOST_AUTO_TEST_CASE() [43/80]

◆ BOOST_AUTO_TEST_CASE() [44/80]

◆ BOOST_AUTO_TEST_CASE() [45/80]

◆ BOOST_AUTO_TEST_CASE() [46/80]

◆ BOOST_AUTO_TEST_CASE() [47/80]

◆ BOOST_AUTO_TEST_CASE() [48/80]

◆ BOOST_AUTO_TEST_CASE() [49/80]

◆ BOOST_AUTO_TEST_CASE() [50/80]

◆ BOOST_AUTO_TEST_CASE() [51/80]

◆ BOOST_AUTO_TEST_CASE() [52/80]

◆ BOOST_AUTO_TEST_CASE() [53/80]

◆ BOOST_AUTO_TEST_CASE() [54/80]

◆ BOOST_AUTO_TEST_CASE() [55/80]

◆ BOOST_AUTO_TEST_CASE() [56/80]

◆ BOOST_AUTO_TEST_CASE() [57/80]

◆ BOOST_AUTO_TEST_CASE() [58/80]

◆ BOOST_AUTO_TEST_CASE() [59/80]

◆ BOOST_AUTO_TEST_CASE() [60/80]

◆ BOOST_AUTO_TEST_CASE() [61/80]

◆ BOOST_AUTO_TEST_CASE() [62/80]

◆ BOOST_AUTO_TEST_CASE() [63/80]

◆ BOOST_AUTO_TEST_CASE() [64/80]

◆ BOOST_AUTO_TEST_CASE() [65/80]

◆ BOOST_AUTO_TEST_CASE() [66/80]

◆ BOOST_AUTO_TEST_CASE() [67/80]

◆ BOOST_AUTO_TEST_CASE() [68/80]

◆ BOOST_AUTO_TEST_CASE() [69/80]

◆ BOOST_AUTO_TEST_CASE() [70/80]

◆ BOOST_AUTO_TEST_CASE() [71/80]

◆ BOOST_AUTO_TEST_CASE() [72/80]

◆ BOOST_AUTO_TEST_CASE() [73/80]

◆ BOOST_AUTO_TEST_CASE() [74/80]