user_object_util.cpp File Reference

#include <ncbi_pch.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <objects/seqtable/Seq_table.hpp>
#include <objects/seqtable/SeqTable_column.hpp>
#include <objects/seqtable/SeqTable_column_info.hpp>
#include <objects/seqtable/SeqTable_multi_data.hpp>
#include <gui/widgets/edit/user_object_util.hpp>
#include <gui/widgets/edit/single_ref_gene_track_loc_panel.hpp>
#include <gui/widgets/edit/single_assembly_tracking_panel.hpp>
#include <gui/widgets/wx/csv_exporter.hpp>
#include <gui/widgets/loaders/table_import_data_source.hpp>

Include dependency graph for user_object_util.cpp:

Go to the source code of this file.

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Functions
	USING_SCOPE (objects)
bool	IsLastRow (wxWindow *wnd, wxSizerItemList &itemList)
CRef< CSeq_table >	ReadTabDelimitedTable (const wxString &filename, bool read_header)
bool	SaveTableFile (const string &save_file_name, CRef< objects::CSeq_table > values_table, bool include_header)
bool	SaveTableRowAsListFile (const string &save_file_name, CRef< objects::CSeq_table > values_table, int col)
void	AddAssemblyUserFieldsFromSeqTable (CRef< CUser_object > obj, CRef< CSeq_table > table)
CRef< CSeq_table >	SeqTableFromAssemblyFields (const CUser_object &obj)

Function Documentation

AddAssemblyUserFieldsFromSeqTable()

void AddAssemblyUserFieldsFromSeqTable	(	CRef< CUser_object >	obj,
		CRef< CSeq_table >	table
	)

Definition at line 493 of file user_object_util.cpp.

References CSeqTable_column_Base::GetData(), CSeqTable_multi_data::GetSize(), CSeqTable_multi_data_Base::GetString(), NStr::IsBlank(), NULL, CUser_field_Base::SetData(), CUser_object_Base::SetData(), CUser_field_Base::SetLabel(), NStr::StringToInt(), and table.

IsLastRow()

bool IsLastRow	(	wxWindow *	wnd,
		wxSizerItemList &	itemList
	)

Definition at line 348 of file user_object_util.cpp.

References NULL.

Referenced by CUserFieldListPanel::AddLastField().

ReadTabDelimitedTable()

CRef<CSeq_table> ReadTabDelimitedTable	(	const wxString &	filename,
		bool	read_header
	)

Definition at line 370 of file user_object_util.cpp.

References CTableImportDataSource::ConvertToSeqAnnot(), CTableImportDataSource::eDelimitedTable, ctll::empty(), CTableImportColumn::eTextColumn, CTableImportColumn::eUnspecifiedText, CTableImportDataSource::GetColumns(), CSeq_annot_Base::GetData(), CTableImportDataSource::GetDelimiterRules(), CSeq_annot_Base::C_Data::GetSeq_table(), i, NStr::Int8ToString(), CTableImportDataSource::LoadTable(), NULL, CTableImportDataSource::RecomputeFields(), CRef< C, Locker >::Reset(), CTableImportDataSource::SetColumnHeaderRow(), CTableDelimiterRules::SetDelimiters(), CTableImportDataSource::SetFirstImportRow(), CTableImportDataSource::SetTableType(), ncbi::grid::netcache::search::fields::size, and table.

Referenced by CAssemblyTrackingPanel::OnImportIntervalsBtnClick().

SaveTableFile()

bool SaveTableFile	(	const string &	save_file_name,
		CRef< objects::CSeq_table >	values_table,
		bool	include_header
	)

Definition at line 415 of file user_object_util.cpp.

References eContent, CCSVExporter::Field(), i, ITERATE, label, CCSVExporter::NewRow(), NStr::NumericToString(), out(), and val.

SaveTableRowAsListFile()

bool SaveTableRowAsListFile	(	const string &	save_file_name,
		CRef< objects::CSeq_table >	values_table,
		int	col
	)

Definition at line 456 of file user_object_util.cpp.

References eContent, CCSVExporter::Field(), CSeqTable_column_Base::GetData(), CSeqTable_multi_data_Base::GetId(), CSeqTable_multi_data_Base::GetInt(), CSeqTable_multi_data::GetSize(), CSeqTable_multi_data_Base::GetString(), i, CSeqTable_multi_data_Base::IsId(), CSeqTable_multi_data_Base::IsInt(), CSeqTable_column_Base::IsSetData(), CSeqTable_multi_data_Base::IsString(), label, CCSVExporter::NewRow(), NStr::NumericToString(), out(), and val.

Referenced by CAssemblyTrackingPanel::OnExportListBtnClick().

SeqTableFromAssemblyFields()

CRef<CSeq_table> SeqTableFromAssemblyFields

(

const CUser_object &

obj

)

Definition at line 547 of file user_object_util.cpp.

References ctll::empty(), NStr::EqualNocase(), CUser_object_Base::GetData(), CSeqTable_column_Base::GetData(), CSeqTable_multi_data::GetSize(), NStr::IsBlank(), CUser_object_Base::IsSetData(), CSeqTable_column_Base::IsSetData(), ITERATE, label, NULL, NStr::NumericToString(), CSeqTable_column_Base::SetData(), and table.

USING_SCOPE()

USING_SCOPE

(

objects

)