1 #ifndef GUI_OBJUTILS___UTIL_CMDS__HPP
2 #define GUI_OBJUTILS___UTIL_CMDS__HPP
namespace ncbi::objects::
static SQLCHAR output[256]
static char test_name[128]
#define END_NCBI_SCOPE
End previously defined NCBI scope.
#define END_SCOPE(ns)
End the previously defined scope.
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
#define BEGIN_SCOPE(ns)
Define a new scope.
#define NCBI_GUIOBJUTILS_EXPORT
Defines to provide correct exporting from DLLs in Windows.
function< CRef< CTaxon3_reply >(const vector< CRef< COrg_ref > > &list)> taxupdate_func_t
Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.
CRef< CCmdComposite > AutofixCommand(objects::CSeq_entry_Handle seh, const string &test_name, string *output, const string &suspect_rules=kEmptyStr)
CRef< CCmdChangeSeq_feat > AdjustGene(const objects::CSeq_feat &orig_feat, const objects::CSeq_feat &new_feat, objects::CScope &scope)
CRef< CCmdComposite > GetRemoveDuplicateGOTermsCommand(objects::CSeq_entry_Handle seh)
CRef< CCmdComposite > GetSynchronizeProteinPartialsCommand(objects::CScope &scope, const objects::CSeq_feat &cds)
CRef< CCmdComposite > CleanupCommand(objects::CSeq_entry_Handle orig_seh, bool extended, bool do_tax)
CRef< CCmdComposite > GetRetranslateCDSCommand(objects::CScope &scope, const objects::CSeq_feat &cds, bool create_general_only)
void GetProductToCDSMap(objects::CScope &scope, map< objects::CBioseq_Handle, set< objects::CSeq_feat_Handle > > &product_to_cds)
CRef< CCmdComposite > GetDisableStrainForwardingCommand(objects::CSeq_entry_Handle seh)
CRef< CCmdComposite > CachedTaxonomyLookupCommand(objects::CSeq_entry_Handle seh, objects::taxupdate_func_t &updater)
CRef< CCmdComposite > TrimStopsFromCompleteCDS(const objects::CSeq_feat &cds, objects::CScope &scope)
void AdjustProteinFeature(objects::CSeq_feat &prot, objects::CBioseq_Handle product, objects::CSeq_feat &cds, bool &cds_change)
CRef< CCmdComposite > GetRmCultureNotesCommand(objects::CSeq_entry_Handle seh)
CRef< CCmdComposite > SetTranslExcept(objects::CSeq_entry_Handle seh, const string &comment, bool strict, bool extend, bool adjust_gene)
CRef< CCmdComposite > GetDeleteAllFeaturesCommand(objects::CSeq_entry_Handle seh, size_t &count, bool remove_proteins=true)
CRef< CCmdComposite > AutofixCommandHugeMode(objects::CSeq_entry_Handle seh, const string &test_name, map< string, size_t > &report, const string &suspect_rules=kEmptyStr)
CRef< CCmdComposite > SpecificHostCleanupCommand(objects::CSeq_entry_Handle seh)
CRef< CCmdComposite > CleanupHugeFileCommand(objects::CSeq_entry_Handle orig_seh, bool extended, bool do_tax, objects::taxupdate_func_t &updater, bool rmv_user_object)
CRef< CCmdComposite > GetDeleteAllFeaturesCommand_Ex(objects::CSeq_entry_Handle seh, size_t &count, bool remove_proteins=true)
CRef< CCmdComposite > GetNormalizeGeneQualsCommand(objects::CSeq_entry_Handle seh)
CRef< CCmdComposite > GetSynchronizeProductMolInfoCommand(objects::CScope &scope, const objects::CSeq_feat &cds)
CRef< CCmdComposite > GetEnableStrainForwardingCommand(objects::CSeq_entry_Handle seh)
CRef< CCmdComposite > TaxonomyLookupCommand(objects::CSeq_entry_Handle seh)
CRef< CCmdComposite > GetDeleteSequenceCommand(objects::CBioseq_Handle bsh)
CRef< CCmdComposite > GetDeleteFeatureCommand(const objects::CSeq_feat_Handle &fh, bool remove_proteins=true)
CRef< CCmdComposite > GetEditLocationCommand(const objects::edit::CLocationEditPolicy &policy, bool retranslate, bool adjust_gene, const objects::CSeq_feat &orig_feat, objects::CScope &scope, int &offset, bool create_general_only)
CRef< CCmdComposite > UpdatemRNAProduct(const objects::CSeq_feat &protein, objects::CScope &scope, string &message)
CRef< CCmdComposite > CreateOrAdjustProteinFeature(objects::CBioseq_Handle product, objects::CSeq_feat &cds, bool &cds_change)
CRef< CCmdComposite > GetReverseComplimentSequenceCommand(objects::CBioseq_Handle bsh)
void SetProteinFeature(objects::CSeq_feat &prot, objects::CBioseq_Handle product, const objects::CSeq_feat &cds)