utilfeat.h

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/* $Id: utilfeat.h 96583 2022-04-16 17:40:58Z stakhovv $
 * ===========================================================================
 *
 *                            PUBLIC DOMAIN NOTICE
 *               National Center for Biotechnology Information
 *
 *  This software/database is a "United States Government Work" under the
 *  terms of the United States Copyright Act.  It was written as part of
 *  the author's official duties as a United States Government employee and
 *  thus cannot be copyrighted.  This software/database is freely available
 *  to the public for use. The National Library of Medicine and the U.S.
 *  Government have not placed any restriction on its use or reproduction.
 *
 *  Although all reasonable efforts have been taken to ensure the accuracy
 *  and reliability of the software and data, the NLM and the U.S.
 *  Government do not and cannot warrant the performance or results that
 *  may be obtained by using this software or data. The NLM and the U.S.
 *  Government disclaim all warranties, express or implied, including
 *  warranties of performance, merchantability or fitness for any particular
 *  purpose.
 *
 *  Please cite the author in any work or product based on this material.
 *
 * ===========================================================================
 *
 * File Name: utilfeat.h
 *
 * Author: Karl Sirotkin, Hsiu-Chuan Chen
 *
 * File Description:
 *
 */
 
#ifndef _UTILFEAT_
#define _UTILFEAT_
 
#define ftable 1 /* Seq-feat type */
 
#include "loadfeat.h"
 
BEGIN_NCBI_SCOPE
 
bool SeqLocHaveFuzz(const objects::CSeq_loc& loc);
 
char* CpTheQualValue(const TQualVector& qlist, const char* qual);
char* GetTheQualValue(TQualVector& qlist, const char* qual);
bool  DeleteQual(TQualVector& qlist, const char* qual);
 
Uint1 GetQualValueAa(char* qval, bool checkseq);
bool  GetGenomeInfo(objects::CBioSource& bsp, const char* bptr);
void  MaybeCutGbblockSource(TEntryList& seq_entries);
 
void   MakeLocStrCompatible(std::string& str);
string location_to_string(const objects::CSeq_loc& loc);
 
END_NCBI_SCOPE
 
#endif