NCBI C++ ToolKit
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variation_util2.hpp File Reference
#include <corelib/ncbiobj.hpp>
#include <corelib/ncbistd.hpp>
#include <objects/seqloc/Seq_loc.hpp>
#include <objects/seqloc/Seq_interval.hpp>
#include <objects/seq/Seq_literal.hpp>
#include <objects/seqalign/Seq_align.hpp>
#include <objects/seqalign/Seq_align_set.hpp>
#include <objects/seq/Seq_data.hpp>
#include <objects/seqfeat/Seq_feat.hpp>
#include <objects/seqfeat/Variation_ref.hpp>
#include <objects/seqfeat/VariantProperties.hpp>
#include <objects/variation/Variation.hpp>
#include <objects/variation/VariantPlacement.hpp>
#include <objects/seqfeat/Variation_inst.hpp>
#include <util/rangemap.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/feat_ci.hpp>
#include <objmgr/seq_vector.hpp>
#include <objmgr/seq_loc_mapper.hpp>
#include <objmgr/util/feature.hpp>
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Classes

class  variation::CVariationUtil
 
struct  variation::CVariationUtil::SFlankLocs
 Calculate upstream (first) and downstream(second) flanks for loc. More...
 
class  variation::CVariationUtil::CCdregionIndex
 Cache seq-data in the CDS regions and the cds features by location. More...
 
struct  variation::CVariationUtil::CCdregionIndex::SCdregion
 
struct  variation::CVariationUtil::CCdregionIndex::SSeqData
 
class  variation::CVariationUtil::CVariantPropertiesIndex
 Given a seq-loc, compute CVariantProperties::TGene_location from annotation. More...
 

Namespaces

 variation
 

Functions

 USING_SCOPE (objects)
 

Function Documentation

◆ USING_SCOPE()

USING_SCOPE ( objects  )
Modified on Sat Apr 20 12:22:36 2024 by modify_doxy.py rev. 669887