#include <corelib/ncbiobj.hpp>#include <corelib/ncbistd.hpp>#include <objects/seqloc/Seq_loc.hpp>#include <objects/seqloc/Seq_interval.hpp>#include <objects/seq/Seq_literal.hpp>#include <objects/seqalign/Seq_align.hpp>#include <objects/seqalign/Seq_align_set.hpp>#include <objects/seq/Seq_data.hpp>#include <objects/seqfeat/Seq_feat.hpp>#include <objects/seqfeat/Variation_ref.hpp>#include <objects/seqfeat/VariantProperties.hpp>#include <objects/variation/Variation.hpp>#include <objects/variation/VariantPlacement.hpp>#include <objects/seqfeat/Variation_inst.hpp>#include <util/rangemap.hpp>#include <objmgr/scope.hpp>#include <objmgr/feat_ci.hpp>#include <objmgr/seq_vector.hpp>#include <objmgr/seq_loc_mapper.hpp>#include <objmgr/util/feature.hpp>
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Classes | |
| class | variation::CVariationUtil |
| struct | variation::CVariationUtil::SFlankLocs |
| Calculate upstream (first) and downstream(second) flanks for loc. More... | |
| class | variation::CVariationUtil::CCdregionIndex |
| Cache seq-data in the CDS regions and the cds features by location. More... | |
| struct | variation::CVariationUtil::CCdregionIndex::SCdregion |
| struct | variation::CVariationUtil::CCdregionIndex::SSeqData |
| class | variation::CVariationUtil::CVariantPropertiesIndex |
| Given a seq-loc, compute CVariantProperties::TGene_location from annotation. More... | |
Namespaces | |
| variation | |
Functions | |
| USING_SCOPE (objects) | |
Function Documentation
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
