NCBI C++ ToolKit
Classes | Macros | Typedefs | Functions
vdbread.hpp File Reference
#include <corelib/ncbistd.hpp>
#include <corelib/ncbiobj.hpp>
#include <sra/readers/sra/exception.hpp>
#include <sra/readers/sra/sdk.hpp>
#include <vector>
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Classes

class  CKDBManager
 
class  CKNSManager
 
class  CVFSManager
 
class  CVPath
 
class  CKConfig
 
class  CVResolver
 
class  CVDBMgr
 
class  CVDBMgr::CRequestContextUpdater
 
class  CVDB
 
class  CVDBTable
 
class  CVDBTableIndex
 
class  CVDBCursor
 
class  CVDBObjectCacheBase
 
class  CVDBObjectCache< Object >
 
class  CVDBColumn
 
class  CVDBColumnBits< ElementBitSize >
 
class  CVDBValue
 
struct  CVDBValue::SRef
 
struct  CVDBValue::SSaveRef
 
class  CVDBValueFor4Bits
 
class  CVDBValueFor2Bits
 
class  CVDBValueFor< V >
 
class  CVDBStringValue
 

Macros

#define DECLARE_VDB_COLUMN(name)
 
#define DECLARE_VDB_COLUMN_AS(type, name)
 
#define DECLARE_VDB_COLUMN_AS_STRING(name)
 
#define DECLARE_VDB_COLUMN_AS_4BITS(name)
 
#define INIT_VDB_COLUMN(name)    NCBI_NAME2(m_, name)(m_Cursor, #name)
 
#define INIT_VDB_COLUMN_BACKUP(name, backup_name)    NCBI_NAME2(m_, name)(m_Cursor, #name, #backup_name)
 
#define INIT_VDB_COLUMN_AS(name, type)    NCBI_NAME2(m_, name)(m_Cursor, "("#type")"#name)
 
#define INIT_OPTIONAL_VDB_COLUMN(name)    NCBI_NAME2(m_, name)(m_Cursor, #name, NULL, CVDBColumn::eMissing_Allow)
 
#define INIT_OPTIONAL_VDB_COLUMN_BACKUP(name, backup_name)    NCBI_NAME2(m_, name)(m_Cursor, #name, #backup_name, CVDBColumn::eMissing_Allow)
 
#define INIT_OPTIONAL_VDB_COLUMN_AS(name, type)    NCBI_NAME2(m_, name)(m_Cursor, "("#type")"#name, NULL, CVDBColumn::eMissing_Allow)
 
#define INIT_CONDITIONAL_VDB_COLUMN(name, condition)    NCBI_NAME2(m_, name)(m_Cursor, (condition)? #name: NULL, NULL, CVDBColumn::eMissing_Allow)
 
#define INIT_CONDITIONAL_VDB_COLUMN_AS(name, type, condition)    NCBI_NAME2(m_, name)(m_Cursor, (condition)? "("#type")"#name: NULL, NULL, CVDBColumn::eMissing_Allow)
 

Typedefs

typedef int64_t TVDBRowId
 
typedef uint64_t TVDBRowCount
 
typedef pair< TVDBRowId, TVDBRowCount > TVDBRowIdRange
 
typedef uint32_t TVDBColumnIdx
 
typedef CVDBValueFor< uint16_t > CVDBUInt16Value
 
typedef CVDBValueFor< char > CVDBBytesValue
 

Functions

 DECLARE_SRA_REF_TRAITS (VDBManager, const)
 
 DECLARE_SRA_REF_TRAITS (VDatabase, const)
 
 DECLARE_SRA_REF_TRAITS (VTable, const)
 
 DECLARE_SRA_REF_TRAITS (VCursor, const)
 
 DECLARE_SRA_REF_TRAITS (KIndex, const)
 
 DECLARE_SRA_REF_TRAITS (KConfig,)
 
 DECLARE_SRA_REF_TRAITS (KDBManager, const)
 
 DECLARE_SRA_REF_TRAITS (KNSManager,)
 
 DECLARE_SRA_REF_TRAITS (VFSManager,)
 
 DECLARE_SRA_REF_TRAITS (VPath, const)
 
 DECLARE_SRA_REF_TRAITS (VResolver,)
 

Macro Definition Documentation

◆ DECLARE_VDB_COLUMN

#define DECLARE_VDB_COLUMN (   name)
Value:
CVDBValue::SRef name(TVDBRowId row, CVDBValue::EMissing missing = CVDBValue::eMissing_Throw) const { \
return CVDBValue::SRef(m_Cursor, row, NCBI_NAME2(m_,name), missing); \
} \
CVDBColumn NCBI_NAME2(m_, name)
CVDBValue::eMissing_Throw
@ eMissing_Throw
Definition: vdbread.hpp:632
NCBI_NAME2
#define NCBI_NAME2(Name1, Name2)
Name concatenation macro with two names.
Definition: ncbistl.hpp:122
row
#define row(bind, expected)
Definition: string_bind.c:73
TVDBRowId
int64_t TVDBRowId
Definition: vdbread.hpp:80

Definition at line 582 of file vdbread.hpp.

◆ DECLARE_VDB_COLUMN_AS

#define DECLARE_VDB_COLUMN_AS (   type,
  name 
)
Value:
CVDBValueFor<type> name(TVDBRowId row, CVDBValue::EMissing missing = CVDBValue::eMissing_Throw) const { \
return CVDBValueFor<type>(m_Cursor, row, NCBI_NAME2(m_,name), missing); \
} \
CVDBColumnBits<sizeof(type)*8> NCBI_NAME2(m_, name)
type
static int type
Definition: getdata.c:31

Definition at line 589 of file vdbread.hpp.

◆ DECLARE_VDB_COLUMN_AS_4BITS

#define DECLARE_VDB_COLUMN_AS_4BITS (   name)
Value:
CVDBValueFor4Bits name(TVDBRowId row) const { \
return CVDBValueFor4Bits(m_Cursor, row, NCBI_NAME2(m_,name)); \
} \
CVDBColumnBits<4> NCBI_NAME2(m_, name)

Definition at line 603 of file vdbread.hpp.

◆ DECLARE_VDB_COLUMN_AS_STRING

#define DECLARE_VDB_COLUMN_AS_STRING (   name)
Value:
CVDBStringValue name(TVDBRowId row, CVDBValue::EMissing missing = CVDBValue::eMissing_Throw) const { \
return CVDBStringValue(m_Cursor, row, NCBI_NAME2(m_,name), missing); \
} \
CVDBColumnBits<8> NCBI_NAME2(m_, name)

Definition at line 596 of file vdbread.hpp.

◆ INIT_CONDITIONAL_VDB_COLUMN

#define INIT_CONDITIONAL_VDB_COLUMN (   name,
  condition 
)     NCBI_NAME2(m_, name)(m_Cursor, (condition)? #name: NULL, NULL, CVDBColumn::eMissing_Allow)

Definition at line 622 of file vdbread.hpp.

◆ INIT_CONDITIONAL_VDB_COLUMN_AS

#define INIT_CONDITIONAL_VDB_COLUMN_AS (   name,
  type,
  condition 
)     NCBI_NAME2(m_, name)(m_Cursor, (condition)? "("#type")"#name: NULL, NULL, CVDBColumn::eMissing_Allow)

Definition at line 624 of file vdbread.hpp.

◆ INIT_OPTIONAL_VDB_COLUMN

#define INIT_OPTIONAL_VDB_COLUMN (   name)     NCBI_NAME2(m_, name)(m_Cursor, #name, NULL, CVDBColumn::eMissing_Allow)

Definition at line 616 of file vdbread.hpp.

◆ INIT_OPTIONAL_VDB_COLUMN_AS

#define INIT_OPTIONAL_VDB_COLUMN_AS (   name,
  type 
)     NCBI_NAME2(m_, name)(m_Cursor, "("#type")"#name, NULL, CVDBColumn::eMissing_Allow)

Definition at line 620 of file vdbread.hpp.

◆ INIT_OPTIONAL_VDB_COLUMN_BACKUP

#define INIT_OPTIONAL_VDB_COLUMN_BACKUP (   name,
  backup_name 
)     NCBI_NAME2(m_, name)(m_Cursor, #name, #backup_name, CVDBColumn::eMissing_Allow)

Definition at line 618 of file vdbread.hpp.

◆ INIT_VDB_COLUMN

#define INIT_VDB_COLUMN (   name)     NCBI_NAME2(m_, name)(m_Cursor, #name)

Definition at line 610 of file vdbread.hpp.

◆ INIT_VDB_COLUMN_AS

#define INIT_VDB_COLUMN_AS (   name,
  type 
)     NCBI_NAME2(m_, name)(m_Cursor, "("#type")"#name)

Definition at line 614 of file vdbread.hpp.

◆ INIT_VDB_COLUMN_BACKUP

#define INIT_VDB_COLUMN_BACKUP (   name,
  backup_name 
)     NCBI_NAME2(m_, name)(m_Cursor, #name, #backup_name)

Definition at line 612 of file vdbread.hpp.

Typedef Documentation

◆ CVDBBytesValue

typedef CVDBValueFor<char> CVDBBytesValue

Definition at line 1077 of file vdbread.hpp.

◆ CVDBUInt16Value

typedef CVDBValueFor<uint16_t> CVDBUInt16Value

Definition at line 1076 of file vdbread.hpp.

◆ TVDBColumnIdx

typedef uint32_t TVDBColumnIdx

Definition at line 85 of file vdbread.hpp.

◆ TVDBRowCount

typedef uint64_t TVDBRowCount

Definition at line 83 of file vdbread.hpp.

◆ TVDBRowId

typedef int64_t TVDBRowId

Definition at line 82 of file vdbread.hpp.

◆ TVDBRowIdRange

typedef pair<TVDBRowId, TVDBRowCount> TVDBRowIdRange

Definition at line 84 of file vdbread.hpp.

Function Documentation

◆ DECLARE_SRA_REF_TRAITS() [1/11]

DECLARE_SRA_REF_TRAITS ( KConfig  )

◆ DECLARE_SRA_REF_TRAITS() [2/11]

DECLARE_SRA_REF_TRAITS ( KDBManager  ,
const   
)

◆ DECLARE_SRA_REF_TRAITS() [3/11]

DECLARE_SRA_REF_TRAITS ( KIndex  ,
const   
)

◆ DECLARE_SRA_REF_TRAITS() [4/11]

DECLARE_SRA_REF_TRAITS ( KNSManager  )

◆ DECLARE_SRA_REF_TRAITS() [5/11]

DECLARE_SRA_REF_TRAITS ( VCursor  ,
const   
)

◆ DECLARE_SRA_REF_TRAITS() [6/11]

DECLARE_SRA_REF_TRAITS ( VDatabase  ,
const   
)

◆ DECLARE_SRA_REF_TRAITS() [7/11]

DECLARE_SRA_REF_TRAITS ( VDBManager  ,
const   
)

◆ DECLARE_SRA_REF_TRAITS() [8/11]

DECLARE_SRA_REF_TRAITS ( VFSManager  )

◆ DECLARE_SRA_REF_TRAITS() [9/11]

DECLARE_SRA_REF_TRAITS ( VPath  ,
const   
)

◆ DECLARE_SRA_REF_TRAITS() [10/11]

DECLARE_SRA_REF_TRAITS ( VResolver  )

◆ DECLARE_SRA_REF_TRAITS() [11/11]

DECLARE_SRA_REF_TRAITS ( VTable  ,
const   
)
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