NCBI C++ ToolKit
Classes | Variables
vecscreen_run.hpp File Reference
#include <corelib/ncbi_limits.hpp>
#include <util/range.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <algo/blast/api/sseqloc.hpp>
#include <algo/blast/api/blast_results.hpp>
#include <objtools/align_format/align_format_util.hpp>
#include <objtools/align_format/vectorscreen.hpp>
#include <algo/blast/api/blast_options_handle.hpp>
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Classes

class  CVecScreenVersion
 
class  CVecscreenRun
 This class runs vecscreen. More...
 
struct  CVecscreenRun::SVecscreenSummary
 Summary of hits. More...
 
class  CVecscreenRun::CFormatter
 The Vecscreen formatter. More...
 

Variables

const string kDefaultVectorDb = "UniVec"
 
const TSeqPos kDefaultTerminalFlexibility = 25
 

Variable Documentation

◆ kDefaultTerminalFlexibility

const TSeqPos kDefaultTerminalFlexibility = 25

Definition at line 66 of file vecscreen_run.hpp.

Referenced by CVecScreenApp::Init().

◆ kDefaultVectorDb

const string kDefaultVectorDb = "UniVec"

Definition at line 64 of file vecscreen_run.hpp.

Referenced by CVecScreenApp::Init().

Modified on Wed Apr 24 14:13:08 2024 by modify_doxy.py rev. 669887