vector_serial.hpp File Reference

#include <corelib/ncbistd.hpp>
#include <util/simple_buffer.hpp>
#include <algo/text/vector.hpp>

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Functions
Serialization interfaces
template<class Key , class Score >
void	Serialize (CNcbiOstream &, const CRawScoreVector< Key, Score > &)
	Generics These throw an exception; we must implement serialization for each type. More...
template<class Key , class Score >
void	Deserialize (CNcbiIstream &istr, CRawScoreVector< Key, Score > &)
template<class Key , class Score >
void	Serialize (CNcbiOstream &, const CScoreVector< Key, Score > &)
template<class Key , class Score >
void	Deserialize (CNcbiIstream &istr, CScoreVector< Key, Score > &)
template<class Key , class Score >
void	Encode (const CRawScoreVector< Key, Score > &, vector< char > &)
template<class Key , class Score >
void	Encode (const CRawScoreVector< Key, Score > &, vector< unsigned char > &)
template<class Key , class Score >
void	Encode (const CRawScoreVector< Key, Score > &, CSimpleBuffer &)
template<class Key , class Score >
void	Decode (const vector< char > &, CRawScoreVector< Key, Score > &)
template<class Key , class Score >
void	Decode (const vector< unsigned char > &, CRawScoreVector< Key, Score > &)
template<class Key , class Score >
void	Decode (const CSimpleBuffer &, CRawScoreVector< Key, Score > &)
template<class Key , class Score >
void	Decode (const void *, size_t, CRawScoreVector< Key, Score > &)
template<class Key , class Score >
void	Encode (const CScoreVector< Key, Score > &, vector< char > &)
template<class Key , class Score >
void	Encode (const CScoreVector< Key, Score > &, vector< unsigned char > &)
template<class Key , class Score >
void	Encode (const CScoreVector< Key, Score > &, CSimpleBuffer &)
template<class Key , class Score >
void	Decode (const vector< char > &, CScoreVector< Key, Score > &)
template<class Key , class Score >
void	Decode (const vector< unsigned char > &, CScoreVector< Key, Score > &)
template<class Key , class Score >
void	Decode (const CSimpleBuffer &, CScoreVector< Key, Score > &)
template<class Key , class Score >
void	Decode (const void *, size_t, CScoreVector< Key, Score > &)
template<>
void	Serialize< Uint4, float > (CNcbiOstream &ostr, const CRawScoreVector< Uint4, float > &vec)
	Specializations for known types. More...
template<>
void	Deserialize< Uint4, float > (CNcbiIstream &istr, CRawScoreVector< Uint4, float > &vec)
template<>
void	Encode< Uint4, float > (const CRawScoreVector< Uint4, float > &vec, vector< unsigned char > &data)
template<>
void	Encode< Uint4, float > (const CRawScoreVector< Uint4, float > &vec, vector< char > &data)
template<>
void	Encode< Uint4, float > (const CRawScoreVector< Uint4, float > &vec, CSimpleBuffer &data)
template<>
void	Decode< Uint4, float > (const vector< unsigned char > &data, CRawScoreVector< Uint4, float > &vec)
template<>
void	Decode< Uint4, float > (const vector< char > &data, CRawScoreVector< Uint4, float > &vec)
template<>
void	Decode< Uint4, float > (const CSimpleBuffer &data, CRawScoreVector< Uint4, float > &vec)
template<>
void	Decode< Uint4, float > (const void *data, size_t size, CRawScoreVector< Uint4, float > &vec)
template<>
void	Serialize< Uint4, float > (CNcbiOstream &ostr, const CScoreVector< Uint4, float > &vec)
template<>
void	Deserialize< Uint4, float > (CNcbiIstream &istr, CScoreVector< Uint4, float > &vec)
template<>
void	Encode< Uint4, float > (const CScoreVector< Uint4, float > &vec, vector< char > &data)
template<>
void	Encode< Uint4, float > (const CScoreVector< Uint4, float > &vec, vector< unsigned char > &data)
template<>
void	Encode< Uint4, float > (const CScoreVector< Uint4, float > &vec, CSimpleBuffer &data)
template<>
void	Decode< Uint4, float > (const vector< char > &data, CScoreVector< Uint4, float > &vec)
template<>
void	Decode< Uint4, float > (const vector< unsigned char > &data, CScoreVector< Uint4, float > &vec)
template<>
void	Decode< Uint4, float > (const CSimpleBuffer &data, CScoreVector< Uint4, float > &vec)
template<>
void	Decode< Uint4, float > (const void *data, size_t size, CScoreVector< Uint4, float > &vec)
template<>
void	Serialize< string, float > (CNcbiOstream &ostr, const CScoreVector< string, float > &vec)
	String based keys Raw vector encoding is not supported. More...
template<>
void	Deserialize< string, float > (CNcbiIstream &istr, CScoreVector< string, float > &vec)
template<>
void	Encode< string, float > (const CScoreVector< string, float > &vec, vector< unsigned char > &data)
template<>
void	Encode< string, float > (const CScoreVector< string, float > &vec, vector< char > &data)
template<>
void	Encode< string, float > (const CScoreVector< string, float > &vec, CSimpleBuffer &data)
template<>
void	Decode< string, float > (const vector< unsigned char > &data, CScoreVector< string, float > &vec)
template<>
void	Decode< string, float > (const vector< char > &data, CScoreVector< string, float > &vec)
template<>
void	Decode< string, float > (const CSimpleBuffer &data, CScoreVector< string, float > &vec)
template<>
void	Decode< string, float > (const void *data, size_t size, CScoreVector< string, float > &vec)

Function Documentation

Decode() [1/8]

template<class Key , class Score >

void Decode	(	const CSimpleBuffer &	,
		CRawScoreVector< Key, Score > &
	)

Definition at line 120 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Decode() [2/8]

template<class Key , class Score >

void Decode	(	const CSimpleBuffer &	,
		CScoreVector< Key, Score > &
	)

Definition at line 177 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Decode() [3/8]

template<class Key , class Score >

void Decode	(	const vector< char > &	,
		CRawScoreVector< Key, Score > &
	)

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 105 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Referenced by rapidjson::internal::CountStringCodePoint(), rapidjson::internal::DecodedStream< SourceStream, Encoding >::Decode(), rapidjson::AutoUTF< CharType >::Decode(), Decode< string, float >(), Decode< Uint4, float >(), rapidjson::internal::DecodedStream< SourceStream, Encoding >::DecodedStream(), CTextUtil::DecodeFreqs(), rapidjson::internal::DecodedStream< SourceStream, Encoding >::Take(), rapidjson::Transcoder< SourceEncoding, TargetEncoding >::Transcode(), rapidjson::Transcoder< SourceEncoding, TargetEncoding >::TranscodeUnsafe(), and rapidjson::Writer< OutputStream, UTF8<>, UTF8<>, CrtAllocator, kWriteDefaultFlags >::WriteString().

Decode() [4/8]

template<class Key , class Score >

void Decode	(	const vector< char > &	,
		CScoreVector< Key, Score > &
	)

Definition at line 163 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Decode() [5/8]

template<class Key , class Score >

void Decode	(	const vector< unsigned char > &	,
		CRawScoreVector< Key, Score > &
	)

Definition at line 112 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Decode() [6/8]

template<class Key , class Score >

void Decode	(	const vector< unsigned char > &	,
		CScoreVector< Key, Score > &
	)

Definition at line 170 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Decode() [7/8]

template<class Key , class Score >

void Decode	(	const void *	,
		size_t	,
		CRawScoreVector< Key, Score > &
	)

Definition at line 128 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Decode() [8/8]

template<class Key , class Score >

void Decode	(	const void *	,
		size_t	,
		CScoreVector< Key, Score > &
	)

Definition at line 184 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Decode< string, float >() [1/4]

template<>

void Decode< string, float >	(	const CSimpleBuffer &	data,
		CScoreVector< string, float > &	vec
	)

Definition at line 389 of file vector_serial.cpp.

References Decode(), and CSimpleBufferT< T, ResizeStrategy >::size().

Decode< string, float >() [2/4]

template<>

void Decode< string, float >	(	const vector< char > &	data,
		CScoreVector< string, float > &	vec
	)

Definition at line 373 of file vector_serial.cpp.

References Decode().

Decode< string, float >() [3/4]

template<>

void Decode< string, float >	(	const vector< unsigned char > &	data,
		CScoreVector< string, float > &	vec
	)

Definition at line 381 of file vector_serial.cpp.

References Decode().

Decode< string, float >() [4/4]

template<>

void Decode< string, float >	(	const void *	data,
		size_t	size,
		CScoreVector< string, float > &	vec
	)

Definition at line 364 of file vector_serial.cpp.

References Deserialize(), and ncbi::grid::netcache::search::fields::size.

Decode< Uint4, float >() [1/8]

template<>

void Decode< Uint4, float >	(	const CSimpleBuffer &	data,
		CRawScoreVector< Uint4, float > &	vec
	)

Definition at line 235 of file vector_serial.cpp.

References Decode(), and CSimpleBufferT< T, ResizeStrategy >::size().

Decode< Uint4, float >() [2/8]

template<>

void Decode< Uint4, float >	(	const CSimpleBuffer &	data,
		CScoreVector< Uint4, float > &	vec
	)

Definition at line 260 of file vector_serial.cpp.

References Decode(), and CSimpleBufferT< T, ResizeStrategy >::size().

Decode< Uint4, float >() [3/8]

template<>

void Decode< Uint4, float >	(	const vector< char > &	data,
		CRawScoreVector< Uint4, float > &	vec
	)

Definition at line 221 of file vector_serial.cpp.

References Decode().

Decode< Uint4, float >() [4/8]

template<>

void Decode< Uint4, float >	(	const vector< char > &	data,
		CScoreVector< Uint4, float > &	vec
	)

Definition at line 242 of file vector_serial.cpp.

References Decode().

Decode< Uint4, float >() [5/8]

template<>

void Decode< Uint4, float >	(	const vector< unsigned char > &	data,
		CRawScoreVector< Uint4, float > &	vec
	)

Definition at line 228 of file vector_serial.cpp.

References Decode().

Decode< Uint4, float >() [6/8]

template<>

void Decode< Uint4, float >	(	const vector< unsigned char > &	data,
		CScoreVector< Uint4, float > &	vec
	)

Definition at line 251 of file vector_serial.cpp.

References Decode().

Decode< Uint4, float >() [7/8]

template<>

void Decode< Uint4, float >	(	const void *	data,
		size_t	size,
		CRawScoreVector< Uint4, float > &	vec
	)

Definition at line 189 of file vector_serial.cpp.

References CRawScoreVector< Key, Score >::clear(), CRawScoreVector< Key, Score >::reserve(), CRawScoreVector< Key, Score >::Set(), and ncbi::grid::netcache::search::fields::size.

Decode< Uint4, float >() [8/8]

template<>

void Decode< Uint4, float >	(	const void *	data,
		size_t	size,
		CScoreVector< Uint4, float > &	vec
	)

Definition at line 269 of file vector_serial.cpp.

References Decode(), and ncbi::grid::netcache::search::fields::size.

Deserialize() [1/2]

template<class Key , class Score >

void Deserialize	(	CNcbiIstream &	istr,
		CRawScoreVector< Key, Score > &
	)

Definition at line 57 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Referenced by Decode< string, float >(), CBDB_BvStore< TBV >::Read(), CBDB_BvSplitDictStore< Key, Dictionary, BvStore, BV >::ReadVector(), and CBDB_BvSplitDictStore< Key, Dictionary, BvStore, BV >::ReadVectorById().

Deserialize() [2/2]

template<class Key , class Score >

void Deserialize	(	CNcbiIstream &	istr,
		CScoreVector< Key, Score > &
	)

Definition at line 71 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Deserialize< string, float >()

template<>

void Deserialize< string, float >	(	CNcbiIstream &	istr,
		CScoreVector< string, float > &	vec
	)

Definition at line 307 of file vector_serial.cpp.

References CScoreVector< Key, Score >::clear(), CScoreVector< Key, Score >::end(), CZipStreamDecompressor::GetDecompressor(), CScoreVector< Key, Score >::insert(), len, and CZipCompression::SetWindowBits().

Deserialize< Uint4, float >() [1/2]

template<>

void Deserialize< Uint4, float >	(	CNcbiIstream &	istr,
		CRawScoreVector< Uint4, float > &	vec
	)

Definition at line 68 of file vector_serial.cpp.

Deserialize< Uint4, float >() [2/2]

template<>

void Deserialize< Uint4, float >	(	CNcbiIstream &	istr,
		CScoreVector< Uint4, float > &	vec
	)

Definition at line 76 of file vector_serial.cpp.

Encode() [1/6]

template<class Key , class Score >

void Encode	(	const CRawScoreVector< Key, Score > &	,
		CSimpleBuffer &
	)

Definition at line 96 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Encode() [2/6]

template<class Key , class Score >

void Encode	(	const CRawScoreVector< Key, Score > &	,
		vector< char > &
	)

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 80 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Referenced by rapidjson::AutoUTF< CharType >::Encode(), Encode< Uint4, float >(), CTextUtil::EncodeFreqs(), rapidjson::GenericReader< SourceEncoding, TargetEncoding, StackAllocator >::ParseStringToStream(), and rapidjson::Transcoder< SourceEncoding, TargetEncoding >::Transcode().

Encode() [3/6]

template<class Key , class Score >

void Encode	(	const CRawScoreVector< Key, Score > &	,
		vector< unsigned char > &
	)

Definition at line 88 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Encode() [4/6]

template<class Key , class Score >

void Encode	(	const CScoreVector< Key, Score > &	,
		CSimpleBuffer &
	)

Definition at line 154 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Encode() [5/6]

template<class Key , class Score >

void Encode	(	const CScoreVector< Key, Score > &	,
		vector< char > &
	)

Definition at line 138 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Encode() [6/6]

template<class Key , class Score >

void Encode	(	const CScoreVector< Key, Score > &	,
		vector< unsigned char > &
	)

Definition at line 146 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Encode< string, float >() [1/3]

template<>

void Encode< string, float >	(	const CScoreVector< string, float > &	vec,
		CSimpleBuffer &	data
	)

Definition at line 354 of file vector_serial.cpp.

References Serialize().

Encode< string, float >() [2/3]

template<>

void Encode< string, float >	(	const CScoreVector< string, float > &	vec,
		vector< char > &	data
	)

Definition at line 334 of file vector_serial.cpp.

References Serialize().

Encode< string, float >() [3/3]

template<>

void Encode< string, float >	(	const CScoreVector< string, float > &	vec,
		vector< unsigned char > &	data
	)

Definition at line 344 of file vector_serial.cpp.

References Serialize().

Encode< Uint4, float >() [1/6]

template<>

void Encode< Uint4, float >	(	const CRawScoreVector< Uint4, float > &	vec,
		CSimpleBuffer &	data
	)

Definition at line 167 of file vector_serial.cpp.

Encode< Uint4, float >() [2/6]

template<>

void Encode< Uint4, float >	(	const CRawScoreVector< Uint4, float > &	vec,
		vector< char > &	data
	)

Definition at line 165 of file vector_serial.cpp.

Encode< Uint4, float >() [3/6]

template<>

void Encode< Uint4, float >	(	const CRawScoreVector< Uint4, float > &	vec,
		vector< unsigned char > &	data
	)

Definition at line 166 of file vector_serial.cpp.

Encode< Uint4, float >() [4/6]

template<>

void Encode< Uint4, float >	(	const CScoreVector< Uint4, float > &	vec,
		CSimpleBuffer &	data
	)

Definition at line 179 of file vector_serial.cpp.

References Encode().

Encode< Uint4, float >() [5/6]

template<>

void Encode< Uint4, float >	(	const CScoreVector< Uint4, float > &	vec,
		vector< char > &	data
	)

Definition at line 171 of file vector_serial.cpp.

References Encode().

Encode< Uint4, float >() [6/6]

template<>

void Encode< Uint4, float >	(	const CScoreVector< Uint4, float > &	vec,
		vector< unsigned char > &	data
	)

Serialize() [1/2]

template<class Key , class Score >

void Serialize	(	CNcbiOstream &	,
		const CRawScoreVector< Key, Score > &
	)

Generics These throw an exception; we must implement serialization for each type.

Definition at line 50 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Referenced by Encode< string, float >().

Serialize() [2/2]

template<class Key , class Score >

void Serialize	(	CNcbiOstream &	,
		const CScoreVector< Key, Score > &
	)

Definition at line 64 of file vector_serial.hpp.

References eUnknown, and NCBI_THROW.

Serialize< string, float >()

template<>

void Serialize< string, float >	(	CNcbiOstream &	ostr,
		const CScoreVector< string, float > &	vec
	)

String based keys Raw vector encoding is not supported.

Definition at line 285 of file vector_serial.cpp.

References ICompression::eLevel_Best, CZipStreamCompressor::GetCompressor(), ITERATE, len, CZipCompression::SetMemoryLevel(), and CZipCompression::SetWindowBits().

Serialize< Uint4, float >() [1/2]

template<>

void Serialize< Uint4, float >	(	CNcbiOstream &	ostr,
		const CRawScoreVector< Uint4, float > &	vec
	)

Specializations for known types.

Uint4-based keys

Definition at line 52 of file vector_serial.cpp.

Serialize< Uint4, float >() [2/2]

template<>

void Serialize< Uint4, float >	(	CNcbiOstream &	ostr,
		const CScoreVector< Uint4, float > &	vec
	)

Definition at line 60 of file vector_serial.cpp.