NCBI C++ ToolKit
Typedefs | Enumerations
wgs-contig.h File Reference
#include <klib/defs.h>
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Typedefs

typedef int16_t NCBI_WGS_component_props
 
typedef int32_t NCBI_WGS_gap_linkage
 

Enumerations

enum  {
  NCBI_WGS_component_WGS = 0 , NCBI_WGS_component_ActiveFinishing = 1 , NCBI_WGS_component_DraftHTG = 2 , NCBI_WGS_component_FinishedHTG = 3 ,
  NCBI_WGS_component_WholeGenomeFinishing = 4 , NCBI_WGS_component_OtherSequence = 5 , NCBI_WGS_component_PreDraft = 6
}
 
enum  { NCBI_WGS_strand_plus = 1 * 16 , NCBI_WGS_strand_minus = 2 * 16 }
 
enum  { NCBI_WGS_gap_known = 1 * -1 , NCBI_WGS_gap_unknown = 2 * -1 }
 
enum  {
  NCBI_WGS_gap_scaffold = 1 * -4 , NCBI_WGS_gap_contig = 2 * -4 , NCBI_WGS_gap_centromere = 3 * -4 , NCBI_WGS_gap_short_arm = 4 * -4 ,
  NCBI_WGS_gap_heterochromatin = 5 * -4 , NCBI_WGS_gap_telomere = 6 * -4 , NCBI_WGS_gap_repeat = 7 * -4 , NCBI_WGS_gap_unknown_type = 8 * -4
}
 
enum  {
  NCBI_WGS_gap_linkage_linked = 1 , NCBI_WGS_gap_linkage_evidence_paired_ends = 2 , NCBI_WGS_gap_linkage_evidence_align_genus = 4 , NCBI_WGS_gap_linkage_evidence_align_xgenus = 8 ,
  NCBI_WGS_gap_linkage_evidence_align_trnscpt = 16 , NCBI_WGS_gap_linkage_evidence_within_clone = 32 , NCBI_WGS_gap_linkage_evidence_clone_contig = 64 , NCBI_WGS_gap_linkage_evidence_map = 128 ,
  NCBI_WGS_gap_linkage_evidence_strobe = 256 , NCBI_WGS_gap_linkage_evidence_unspecified = 512 , NCBI_WGS_gap_linkage_evidence_pcr = 1024 , NCBI_WGS_gap_linkage_evidence_proximity_ligation = 2048
}
 
enum  { NCBI_WGS_acc_token_unrecognized = 1 , NCBI_WGS_acc_token_prefix = 2 , NCBI_WGS_acc_token_contig = 3 }
 

Typedef Documentation

◆ NCBI_WGS_component_props

Definition at line 54 of file wgs-contig.h.

◆ NCBI_WGS_gap_linkage

Definition at line 111 of file wgs-contig.h.

Enumeration Type Documentation

◆ anonymous enum

anonymous enum
Enumerator
NCBI_WGS_component_WGS 
NCBI_WGS_component_ActiveFinishing 
NCBI_WGS_component_DraftHTG 
NCBI_WGS_component_FinishedHTG 
NCBI_WGS_component_WholeGenomeFinishing 
NCBI_WGS_component_OtherSequence 
NCBI_WGS_component_PreDraft 

Definition at line 70 of file wgs-contig.h.

◆ anonymous enum

anonymous enum
Enumerator
NCBI_WGS_strand_plus 
NCBI_WGS_strand_minus 

Definition at line 89 of file wgs-contig.h.

◆ anonymous enum

anonymous enum
Enumerator
NCBI_WGS_gap_known 
NCBI_WGS_gap_unknown 

Definition at line 102 of file wgs-contig.h.

◆ anonymous enum

anonymous enum
Enumerator
NCBI_WGS_gap_scaffold 
NCBI_WGS_gap_contig 
NCBI_WGS_gap_centromere 
NCBI_WGS_gap_short_arm 
NCBI_WGS_gap_heterochromatin 
NCBI_WGS_gap_telomere 
NCBI_WGS_gap_repeat 
NCBI_WGS_gap_unknown_type 

Definition at line 122 of file wgs-contig.h.

◆ anonymous enum

anonymous enum
Enumerator
NCBI_WGS_gap_linkage_linked 
NCBI_WGS_gap_linkage_evidence_paired_ends 
NCBI_WGS_gap_linkage_evidence_align_genus 
NCBI_WGS_gap_linkage_evidence_align_xgenus 
NCBI_WGS_gap_linkage_evidence_align_trnscpt 
NCBI_WGS_gap_linkage_evidence_within_clone 
NCBI_WGS_gap_linkage_evidence_clone_contig 
NCBI_WGS_gap_linkage_evidence_map 
NCBI_WGS_gap_linkage_evidence_strobe 
NCBI_WGS_gap_linkage_evidence_unspecified 
NCBI_WGS_gap_linkage_evidence_pcr 
NCBI_WGS_gap_linkage_evidence_proximity_ligation 

Definition at line 149 of file wgs-contig.h.

◆ anonymous enum

anonymous enum
Enumerator
NCBI_WGS_acc_token_unrecognized 
NCBI_WGS_acc_token_prefix 
NCBI_WGS_acc_token_contig 

Definition at line 175 of file wgs-contig.h.

Modified on Sat Feb 24 07:49:56 2024 by modify_doxy.py rev. 669887