win_mask_gen_counts.hpp File Reference

#include <string>
#include <vector>
#include <corelib/ncbitype.h>
#include <corelib/ncbistre.hpp>
#include <objmgr/bioseq_ci.hpp>
#include <objmgr/object_manager.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/seq_entry_handle.hpp>
#include <objtools/data_loaders/genbank/gbloader.hpp>
#include <objtools/seqmasks_io/mask_fasta_reader.hpp>
#include <objtools/seqmasks_io/mask_bdb_reader.hpp>
#include <algo/winmask/seq_masker_ostat.hpp>
#include <algo/winmask/win_mask_util.hpp>

Include dependency graph for win_mask_gen_counts.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Go to the SVN repository for this file.

Classes
class	CWinMaskCountsGenerator
	This class encapsulates the n-mer frequency counts generation functionality of winmasker. More...
class	CWinMaskCountsGenerator::GenCountsException
	Exceptions that CWinMaskCountsGenerator may throw. More...