NCBI C++ ToolKit
Classes | Macros
xcript_tests.hpp File Reference
#include <algo/seqqa/seqtest.hpp>
+ Include dependency graph for xcript_tests.hpp:
+ This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Go to the SVN repository for this file.

Classes

class  CTestTranscript
 
class  CTestTranscript_CountCdregions
 Count the number of annotated coding regions. More...
 
class  CTestTranscript_CdsFlags
 Check coding regions for "partial", "pseudo", and "except" flags. More...
 
class  CTestTranscript_InframeUpstreamStart
 Check to see if the sequence contains a CDS feature that has an in-frame upstream start codon. More...
 
class  CTestTranscript_InframeUpstreamStop
 Check to see if the sequence contains a CDS feature that has an in-frame upstream stop codon. More...
 
class  CTestTranscript_CodingPropensity
 Measure the coding propensity of the CDS feature annotated on a CDS feature. More...
 
class  CTestTranscript_TranscriptLength
 Measure the length of an mRNA sequence. More...
 
class  CTestTranscript_TranscriptCdsLength
 Measure the length of an CDS feature on a transcript sequence. More...
 
class  CTestTranscript_CdsStartCodon
 Check to see if the sequence contains a CDS feature that has a start codon. More...
 
class  CTestTranscript_CdsStopCodon
 Check to see if the sequence contains a CDS feature that has a stop codon. More...
 
class  CTestTranscript_PrematureStopCodon
 Check CDS features for premature stop codons. More...
 
class  CTestTranscript_CompareProtProdToTrans
 Compare the annotated protein product of a CDS in the database to actual translation of that CDS. More...
 
class  CTestTranscript_Utrs
 Compare the annotated protein product of a CDS in the database to actual translation of that CDS. More...
 
class  CTestTranscript_PolyA
 Count the number of As at the end of the sequence. More...
 
class  CTestTranscript_Orfs
 Categorize ORFs in this transcript sequence. More...
 
class  CTestTranscript_Code_break
 Count code-breaks on CDS. More...
 
class  CTestTranscript_OrfExtension
 See how far the annotated CDS can be extended 5' to an ATG without hitting a stop. More...
 
class  CTestTranscript_CountAmbiguities
 Count ambiguous residues in transcript and CDS. More...
 

Macros

#define DECLARE_TRANSCRIPT_TEST(name)
 

Macro Definition Documentation

◆ DECLARE_TRANSCRIPT_TEST

#define DECLARE_TRANSCRIPT_TEST (   name)
Value:
class NCBI_XALGOSEQQA_EXPORT CTestTranscript_##name : public CTestTranscript \
{ \
public: \
CRef<objects::CSeq_test_result_set> \
RunTest(const CSerialObject& obj, \
const CSeqTestContext* ctx); \
}
CSeqTestContext defines any contextual information that a derived class might need.
Definition: seqtest.hpp:52
Base class for all serializable objects.
Definition: serialbase.hpp:150
CS_CONTEXT * ctx
Definition: t0006.c:12
#define NCBI_XALGOSEQQA_EXPORT
Definition: ncbi_export.h:1025

Definition at line 46 of file xcript_tests.hpp.

Modified on Mon Apr 22 04:05:21 2024 by modify_doxy.py rev. 669887