[v1] Log of /trunk/c++/include/algo/blast/api/traceback

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Modified Fri Jan 23 12:27:33 2015 UTC (9 years, 4 months ago) by madden
File length: 5557 byte(s)
Diff to previous 60454

Add CBlastTracebackSearch::RunSimple to run traceback (rescore matches with CBS) but not produce alignment, JIRA:WB-1721

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Modified Fri Nov 22 17:08:29 2013 UTC (10 years, 6 months ago) by camacho
File length: 5445 byte(s)
Diff to previous 50064

Merged changes from 'branches/blast/projects/mt_traceback' (Revisions 419186:419223) into 'trunk/c++'.

Incorporate MT Traceback changes JIRA SB-1201

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Modified Mon Jun 13 18:22:23 2011 UTC (13 years ago) by camacho
File length: 5424 byte(s)
Diff to previous 48360

Refactor CBl2Seq to use CLocalBlast JIRA SB-706

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Modified Fri Jan 7 18:33:31 2011 UTC (13 years, 5 months ago) by maning
File length: 5200 byte(s)
Diff to previous 41998

Remove partial fetching implementation from API level (traceback_stage.cpp) and install it in the core level (blast_traceback.cpp and blast_kappa.c).  JIRA SB-716

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Modified Wed May 27 17:35:47 2009 UTC (15 years ago) by camacho
File length: 5507 byte(s)
Diff to previous 40923

Merged changes from 'branches/blast/staging' (Revisions 160959:161393) into 'trunk/c++'.

Pre-BLAST 2.2.21 release merge JIRA SB-166

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Modified Tue Feb 3 18:13:26 2009 UTC (15 years, 4 months ago) by camacho
File length: 5985 byte(s)
Diff to previous 39379

Merged changes from 'branches/blast/staging' (Revisions 151140:151309) into 'trunk/c++'.

Pre-release BLAST 2.2.20 merge. JIRA SB-166

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Modified Mon Sep 22 18:25:56 2008 UTC (15 years, 8 months ago) by ucko
File length: 5818 byte(s)
Diff to previous 39263

Formally consolidate BLAST seqdb and gene_info readers and writers under
objtools/blast to allow for proper componentization.  JIRA: CXX-712

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Modified Mon Sep 15 16:35:34 2008 UTC (15 years, 8 months ago) by camacho
File length: 5813 byte(s)
Diff to previous 33815

Merged changes from 'branches/blast/staging' (Revisions 140025:140179) into 'trunk/c++'.

Bi-weekly merge

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Modified Fri May 4 17:18:18 2007 UTC (17 years, 1 month ago) by kazimird
File length: 6007 byte(s)
Diff to previous 33478

Fixed svn properties in trunk/c++.

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Modified Mon Apr 16 19:31:52 2007 UTC (17 years, 2 months ago) by camacho
File length: 6007 byte(s)
Diff to previous 32819

Follow-up to removal of discontinuous Seq-aligns from BLAST:
Extend CSearchResultSet to handle database and two-sequence BLAST

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Modified Fri Mar 2 21:10:15 2007 UTC (17 years, 3 months ago) by camacho
File length: 6001 byte(s)
Diff to previous 32661

rm IBlastSeqSrcAdapter

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Modified Thu Feb 22 16:16:24 2007 UTC (17 years, 3 months ago) by bealer
File length: 6347 byte(s)
Diff to previous 31667

- Doxygen fixes.

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Modified Fri Dec 15 16:31:38 2006 UTC (17 years, 6 months ago) by camacho
File length: 5899 byte(s)
Diff to previous 28413

Add PSSM as an optional parameter

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Modified Mon May 22 13:31:26 2006 UTC (18 years ago) by madden
File length: 5707 byte(s)
Diff to previous 27082

Add SDatabaseScanData member to CBlastTracebackSearch

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Modified Tue Mar 7 16:35:27 2006 UTC (18 years, 3 months ago) by bealer
File length: 5423 byte(s)
Diff to previous 26327

- Add "use_this_gi" scores for protein searches with Entrez queries.

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Modified Tue Jan 24 15:17:44 2006 UTC (18 years, 4 months ago) by camacho
File length: 5065 byte(s)
Diff to previous 25818

+ TSearchMessages to ctor

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Modified Wed Dec 21 21:09:06 2005 UTC (18 years, 5 months ago) by bealer
File length: 4915 byte(s)
Diff to previous 25183

- Copy error messages to output of traceback stage.

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Modified Thu Nov 10 13:58:34 2005 UTC (18 years, 7 months ago) by camacho
File length: 4850 byte(s)
Diff to previous 25179

Doxygen fixes

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Modified Wed Nov 9 20:56:26 2005 UTC (18 years, 7 months ago) by camacho
File length: 4821 byte(s)
Diff to previous 25146

Refactorings to allow CPsiBl2Seq to produce Seq-aligns in the same format
as CBl2Seq and reduce redundant code.

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Modified Tue Nov 8 18:59:31 2005 UTC (18 years, 7 months ago) by camacho
File length: 4638 byte(s)
Diff to previous 24720

Removed unneeded typedef

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Modified Wed Oct 19 16:32:48 2005 UTC (18 years, 7 months ago) by camacho
File length: 4639 byte(s)
Diff to previous 24623

Refactored initialization code for IBlastSeqInfoSrc

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Modified Fri Oct 14 12:19:59 2005 UTC (18 years, 8 months ago) by camacho
File length: 4818 byte(s)
Diff to previous 24375

Make CPsiBl2Seq use CBlastTracebackSearch

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Modified Thu Sep 22 13:34:33 2005 UTC (18 years, 8 months ago) by camacho
File length: 4205 byte(s)
Diff to previous 24339

Doxygen fixes

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Added Wed Sep 21 15:08:24 2005 UTC (18 years, 8 months ago) by camacho
File length: 4209 byte(s)

Initial revision of interfaces to separate preliminary and traceback
stages of the BLAST search

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Log of /trunk/c++/include/algo/blast/api/traceback_stage.hpp