Log of /trunk/c++/include/objtools/alnmgr/aln_tests.hpp

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Revision 53721 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Apr 12 15:23:21 2012 UTC (12 years, 1 month ago) by grichenk
File length: 5328 byte(s)
Diff to previous 52484

More doxygen comments for alignment manager. JIRA CXX-2301

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Revision 52484 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Dec 29 16:52:24 2011 UTC (12 years, 4 months ago) by grichenk
File length: 4893 byte(s)
Diff to previous 36279

Implemented CreateSplicedsegFromAnchoredAln, added ConvertSeq_align function. JIRA CXX-2817

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Revision 36279 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Dec 12 20:52:51 2007 UTC (16 years, 5 months ago) by todorov
File length: 4815 byte(s)
Diff to previous 33815

Typical template usage typedefs

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Revision 33815 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri May 4 17:18:18 2007 UTC (17 years ago) by kazimird
File length: 4678 byte(s)
Diff to previous 32839

Fixed svn properties in trunk/c++.

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Revision 32839 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Mar 5 20:41:55 2007 UTC (17 years, 2 months ago) by kazimird
File length: 4678 byte(s)
Diff to previous 32474

CVS $Log$ keyword clean-up: everything except "internal".

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Revision 32474 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Feb 7 20:15:11 2007 UTC (17 years, 3 months ago) by dicuccio
File length: 6619 byte(s)
Diff to previous 32036

Use explicit CConstRef<> conversion

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Revision 32036 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Jan 10 20:31:57 2007 UTC (17 years, 4 months ago) by todorov
File length: 6596 byte(s)
Diff to previous 32035

Improved comments and removed a commented-out line.  Thanks for fixing
operator[](const CSeq_align&) Aaron!

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Revision 32035 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Jan 10 19:40:02 2007 UTC (17 years, 4 months ago) by ucko
File length: 6478 byte(s)
Diff to previous 32034

Fix operator[](const CSeq_align&) to be truly const.

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Revision 32034 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Jan 10 19:32:55 2007 UTC (17 years, 4 months ago) by ucko
File length: 6100 byte(s)
Diff to previous 32030

Fix syntax error (typo) affecting debug builds.

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Revision 32030 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Jan 10 19:15:13 2007 UTC (17 years, 4 months ago) by todorov
File length: 6006 byte(s)
Diff to previous 32021

Improved comments.
CException -> CAlnException

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Revision 32021 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Jan 10 18:11:34 2007 UTC (17 years, 4 months ago) by todorov
File length: 5569 byte(s)
Diff to previous 31590

Renamed CAlnSeqIdVector -> CAlnIdMap
CAlnIdMap is now a dual-access (vector-like indexed + seq-align
lookup) aln<->id mapping container.

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Revision 31590 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Dec 12 20:50:53 2006 UTC (17 years, 5 months ago) by todorov
File length: 4379 byte(s)
Diff to previous 31556

Update CAlnSeqIdVector per the new seq-id abstraction.
Rm CSeqIdAlnBitmap since this analysis is now done directly in
CAlnStats's constructor.

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Revision 31556 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Dec 11 20:43:09 2006 UTC (17 years, 5 months ago) by yazhuk
File length: 12938 byte(s)
Diff to previous 31312

Removed conflicting TSeqIdPtr definition.

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Revision 31312 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Nov 27 19:39:19 2006 UTC (17 years, 5 months ago) by todorov
File length: 12923 byte(s)
Diff to previous 31182

Require comp in CSeqIdAlnBitmap

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Revision 31182 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Nov 20 18:47:16 2006 UTC (17 years, 5 months ago) by todorov
File length: 12784 byte(s)
Diff to previous 30974

+ CSeqIdAlnBitmap::GetBaseWidths()
+ CSeqIdAlnBitmap::GetAnchorRows()

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Revision 30974 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Nov 9 00:16:54 2006 UTC (17 years, 6 months ago) by todorov
File length: 9867 byte(s)
Diff to previous 30970

Fixed Dump.

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Revision 30970 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Nov 8 22:28:14 2006 UTC (17 years, 6 months ago) by todorov
File length: 9800 byte(s)
Diff to previous 30910

+ template <class TOutStream> void Dump(TOutStream& os)

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Revision 30910 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Nov 6 19:59:54 2006 UTC (17 years, 6 months ago) by todorov
File length: 8777 byte(s)
Diff to previous 30736

Minor changes.  Added GetAlnVector()

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Revision 30736 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Oct 23 17:17:12 2006 UTC (17 years, 6 months ago) by todorov
File length: 8509 byte(s)
Diff to previous 30702

name change AlnContainer -> AlnVector, since random access is required.

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Revision 30702 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Oct 19 17:08:12 2006 UTC (17 years, 6 months ago) by todorov
File length: 8406 byte(s)
Diff to previous 30660

- #include <objtools/alnmgr/seqid_comp.hpp>

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Revision 30660 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Oct 17 21:53:31 2006 UTC (17 years, 6 months ago) by todorov
File length: 8355 byte(s)
Diff to previous 30650

+ GetAnchorHandle
Renamed all accessors with Get*

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Revision 30650 - (view) (download) (as text) (annotate) - [select for diffs]
Added Tue Oct 17 19:29:23 2006 UTC (17 years, 6 months ago) by todorov
File length: 8202 byte(s)

Initial revision.