Log of /trunk/c++/src/objects/seqfeat/Variation_ref.cpp

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Revision 74562 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Sep 13 13:46:29 2016 UTC (7 years, 8 months ago) by ivanov
File length: 37450 byte(s)
Diff to previous 71180

Fixed some GCC warnings: -Wconversion -Wshadow -Wunused-parameter. JIRA:CXX-5413

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Revision 71180 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Feb 16 19:46:22 2016 UTC (8 years, 3 months ago) by foleyjp
File length: 37446 byte(s)
Diff to previous 71168

JIRA: MSS-540 Added Duplication and Identity setter methods to CVariation_ref

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Revision 71168 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Feb 16 16:32:10 2016 UTC (8 years, 3 months ago) by foleyjp
File length: 36087 byte(s)
Diff to previous 71141

JIRA: MSS-540 Added new substitution setter methods back into CVariation_ref

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Revision 71141 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Feb 11 20:33:07 2016 UTC (8 years, 3 months ago) by foleyjp
File length: 34505 byte(s)
Diff to previous 71127

JIRA: MSS-540 Undoing earlier changes to CVariation_ref that broke the build

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Modified Thu Feb 11 17:49:57 2016 UTC (8 years, 3 months ago) by foleyjp
File length: 36087 byte(s)
Diff to previous 65036

JIRA: MSS-540 Added new CVariation_ref SNV/MNP/Missense setter methods for use in the new HGVS library

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Revision 65036 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Oct 30 16:55:03 2014 UTC (9 years, 7 months ago) by vasilche
File length: 34505 byte(s)
Diff to previous 51607

Fixed size_t conversion warnings. JIRA: CXX-5057

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Modified Mon Oct 17 23:59:36 2011 UTC (12 years, 7 months ago) by dicuccio
File length: 34496 byte(s)
Diff to previous 51598

Make sure that recently-pirvate-but-now-deprecated-methods actually do
something, as it seems they are(may) still be used

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Revision 51598 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Oct 17 17:15:58 2011 UTC (12 years, 7 months ago) by dicuccio
File length: 36122 byte(s)
Diff to previous 47365

Forward requests for deprecated fields to their new locations in data.
Throw exceptions where needed.
Implement PostRead() hook to rewrite data into expected formats.
Hide some unused long-deprecated functions.

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Revision 47365 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Sep 30 16:51:18 2010 UTC (13 years, 8 months ago) by dicuccio
File length: 16486 byte(s)
Diff to previous 46842

Add APIs for unknown, other variants
Set ins-before on unknown insertions

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Revision 46842 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Aug 17 16:08:43 2010 UTC (13 years, 9 months ago) by dicuccio
File length: 15858 byte(s)
Diff to previous 46790

Implement Is*() functions for variation-ref subtypes
JIRA: GBW-115

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Revision 46790 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Aug 10 23:38:30 2010 UTC (13 years, 10 months ago) by dicuccio
File length: 11872 byte(s)
Diff to previous 46659

Add new Variation-inst.data type (complex).
Add APIs to create empty insertions, CNVs of type gain or loss, and complext
variations
JIRA: GBW-113

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Revision 46659 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Jul 29 13:33:16 2010 UTC (13 years, 10 months ago) by dicuccio
File length: 10916 byte(s)
Diff to previous 46558

Additional functions supporting:
 - Deletion/insertion
 - Inversion
 - Eversion
 - Translocation
 - UPD

JIRA: GBW-114

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Revision 46558 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Jul 20 12:27:56 2010 UTC (13 years, 10 months ago) by dicuccio
File length: 8847 byte(s)
Diff to previous 46461

Multiple Variation-ref spec updates in preparation for commencement of
submission
 - snp -> snv
 - VariantProperties: split gene-function into gene-location and effect
 - VariantProperties: abandon hapmap fields, introduce more flexible project
   binding
 - Delta-item: 'seq' is OPTIONAL
 - update Variation-inst comments

JIRA: STV-292

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Revision 46461 - (view) (download) (as text) (annotate) - [select for diffs]
Added Mon Jul 12 12:16:36 2010 UTC (13 years, 11 months ago) by dicuccio
File length: 8847 byte(s)

First version of APIs to create variants
JIRA: STV-292, STV-582