Log of /trunk/c++/src/objtools/readers/hgvs/hgvs_protein_parser.cpp

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Revision 93579 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Sat May 1 20:54:52 2021 UTC (3 years ago) by stakhovv
File length: 5850 byte(s)
Diff to previous 75020

xobjread: remove trailing whitespace; JIRA:RW-1283

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Revision 75020 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Oct 13 18:16:22 2016 UTC (7 years, 7 months ago) by foleyjp
File length: 5921 byte(s)
Diff to previous 74277

JIRA: MSS-647 Added support for protein silent changes. Also some cleanup

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Revision 74277 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Aug 23 16:31:27 2016 UTC (7 years, 9 months ago) by foleyjp
File length: 5809 byte(s)
Diff to previous 72906

JIRA: MSS-645 Disabled support for frameshifts from stop codon. This does not appear in the HGVS spec and is not supported by the legacy code

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Revision 72906 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Jun 7 15:38:38 2016 UTC (7 years, 11 months ago) by foleyjp
File length: 6164 byte(s)
Diff to previous 72897

JIRA: MSS-616 Moved parsing of composite variants into hgvs_parser.[hc],pp

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Revision 72897 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Jun 6 18:36:42 2016 UTC (7 years, 11 months ago) by foleyjp
File length: 7399 byte(s)
Diff to previous 72562

JIRA: MSS-610 Added IREP-to-Seqfeat code

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Revision 72562 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon May 16 14:16:53 2016 UTC (8 years ago) by foleyjp
File length: 7377 byte(s)
Diff to previous 72446

JIRA: MSS-610 New HGVS parser now supports special variants

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Revision 72446 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon May 9 14:31:04 2016 UTC (8 years ago) by foleyjp
File length: 7281 byte(s)
Diff to previous 72351

JIRA: MSS-571 Code now recognizes chimeras and mosaics and throws an exception if they are encountered

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Revision 72351 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue May 3 15:43:11 2016 UTC (8 years ago) by foleyjp
File length: 7340 byte(s)
Diff to previous 72167

JIRA: MSS-589 Fixed bug in protein grammar. The grammar now checks for N-terminal protein extensions before it checks for missense variants

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Revision 72167 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Apr 19 18:10:43 2016 UTC (8 years, 1 month ago) by foleyjp
File length: 7377 byte(s)
Diff to previous 71906

JIRA: MSS-571 Added hgvs-to-irep support of mosaics. Chimera parsing still fails

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Revision 71906 - (view) (download) (as text) (annotate) - [select for diffs]
Added Wed Apr 6 14:47:01 2016 UTC (8 years, 1 month ago) by foleyjp
File length: 8528 byte(s)

JIRA: MSS-596 Added cpp files missed in last commit