Log of /trunk/c++/src/app/read_blast_result/read_blast_result.cpp

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Revision 92162 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Dec 22 17:39:42 2020 UTC (3 years, 4 months ago) by grichenk
File length: 22064 byte(s)
Diff to previous 67346

Replaced auto_ptr with unique_ptr. JIRA CXX-11620

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Modified Mon May 11 14:25:25 2015 UTC (9 years ago) by badrazat
File length: 22056 byte(s)
Diff to previous 50906

const CArgs& args is used

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Modified Wed Aug 17 14:52:21 2011 UTC (12 years, 9 months ago) by badrazat
File length: 22049 byte(s)
Diff to previous 49675

added message

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Modified Mon May 16 18:30:03 2011 UTC (13 years ago) by badrazat
File length: 22014 byte(s)
Diff to previous 45569

added check for dupe locus-tags, if have them, abort fatally

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Modified Wed Apr 28 16:54:00 2010 UTC (14 years ago) by badrazat
File length: 21985 byte(s)
Diff to previous 45475

added working short proteins detection, but without handling fuzzy
proteins at the end of the contigs yet.

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Modified Mon Apr 19 13:36:57 2010 UTC (14 years ago) by badrazat
File length: 21707 byte(s)
Diff to previous 45452

fixed bug reported by Leigh: Mon 4/19/2010 7:22 AM (some complete
overlaps are not reported)

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Modified Thu Apr 15 10:41:47 2010 UTC (14 years, 1 month ago) by badrazat
File length: 21704 byte(s)
Diff to previous 40506

update

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Revision 40506 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Dec 22 19:13:34 2008 UTC (15 years, 4 months ago) by badrazat
File length: 21057 byte(s)
Diff to previous 40345

added kfs

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Modified Fri Dec 5 15:18:42 2008 UTC (15 years, 5 months ago) by badrazat
File length: 20911 byte(s)
Diff to previous 40280

cdregions of frameshifts were not deleted in nascent Refseq style
entries, fixed + some minor fixes in missing.cpp

Now RemoveProblems runs twice: first time to correct whatever is
correctable as well as assigning problematic names to locations, second
time to swipe the rest

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Modified Mon Dec 1 20:03:50 2008 UTC (15 years, 5 months ago) by badrazat
File length: 20679 byte(s)
Diff to previous 38349

added undef strand + fixing strands on the fly

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Modified Tue Jun 24 20:05:20 2008 UTC (15 years, 10 months ago) by badrazat
File length: 20165 byte(s)
Diff to previous 36722

update

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Revision 36722 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Jan 30 14:03:09 2008 UTC (16 years, 3 months ago) by badrazat
File length: 20157 byte(s)
Diff to previous 36595

double {{ were restored.

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Modified Thu Jan 17 15:13:18 2008 UTC (16 years, 4 months ago) by badrazat
File length: 20154 byte(s)
Diff to previous 36536

edit

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Modified Thu Jan 10 20:44:13 2008 UTC (16 years, 4 months ago) by badrazat
File length: 18573 byte(s)
Diff to previous 36511

changes

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Added Wed Jan 9 19:33:47 2008 UTC (16 years, 4 months ago) by kazimird
File length: 21866 byte(s)

Imported the "specialty/frameshifts/read_blast_result" CVS module (into src/app/).