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public property set
Version 3.4 snapshot
public property set
docsum version 3.3
public property set
Latest dbSNP spec derived from XML schema
Public property set
Added: 'remap' enum value for PrimarySequence source
public property set
Version 3.0 snapshot
public version set
Added missing 'unknown' enum to the Ss moltype
Set PUBLIC_ASN_SPEC property"
Modified: added fields
New 2005 version
Rollback to build 124
New 2005 version
Removed contig-allele for backward compatibility
Added: loc-types 4, 5, 6
Rolled back to 1.47 for old Entrez docsum files
Added: contig-allele
Added: rs merge history
Added: mixed(7) subsnp_class
Added: genomic build id
Added: wgs source-db code
Added: assembly field
Modified: allele info moved to popinfo structure
Changed val-hapmap to validated-by-hapmap
Added: val-hapmap field
Modified: sequences now optional for NSE-rs
Added: copyright notice
Syntax error fixed
*** empty log message ***
Modified: validation status is represented by 4 boolean values
Added moltype for rs and ss, create-build, update-build for rs
sts-info and unigene-info added
Fixed wrong type name NSE-date to NSE-Date
added NSE-ss linkout-url, validation status; NSE-rs create-date, update-date; NSE-popinfo pop-class, and new section NSE-rsStruct with 3D structure data
added subsnp method-class and dbSNP-build-id
Fixed syntax bug
Rollback to R1.26, as R1.27 has a syntax bug
added dense option to hit-quality for SNPs mapped to dense regions like HLA
correction to golden path (UCSC) contig hits
added UCSC mapping coordinates, and added amino-acid position to function-set
added subsnp-class (8) = mnp for multiple nucleotide polymorphisms with alleles of common length > 1 bp
added source-db (5) for RefSeq-genomic and ncbi-build-id for build number of genome mapping data
source-db (2) defined for GenBank STS division
added snp-class 'mnp' for variants with allele length > 1
typo correction and clarification of fxn-class names to fxn-class-contig and fxn-class-mrna
added exception value (9) to fxn-set
Fixed: NSE-ss::orient: refersed -> reversed.
added seq-ss-exemplar and NSE-ss.orient to report orientation of cluster members to NSE-rs and its exemplar sequence, NSE-rs.seq-ss-exemplar.
added reference fxn-class if SNP allele is observed on reference contig sequence
additional documentation regarding refSNP flanking sequence: lowercase for repetititve regions and segmentation of long flanking sequences
removed unnecessary samplesize from NSE-Pop.. data in NSE-ss-popinfo
added samplesize to NSE-Pop
strain added to NSE-Assay
added MapLinkArchive to Table Source for sequence-mapset
added orientation to NSE-SeqLoc
added orientation/hit quality to contig hits, added source database to genbank hits
added subsnp frequency data and refsnp function via contig annotation
Minor errors fixed
merged docsum.asn and export.asn in this version for a single data structure that can be populated as a brief-set (to emulate docsum.asn) or as a full-set for data exchange (to emulate exchange.asn)
added subsnp-id to export.asn and made loc-snp-id optional in both export.asn and docsum.asn
added ambiguousloc and lowmapquality to legal withdrawn reasons
added subsnp-class and mixed snp-class type
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