/[v1]/trunk/c++/src/objects/genomecoll/genome_collection.asn
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Revision 95484 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Nov 18 18:50:23 2021 UTC (2 years, 5 months ago) by smithrg
File length: 20283 byte(s)
Diff to previous 92644 
JIRA: ASM-1280 Add new stat-category gc-perc.
Revision 92644 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Feb 2 19:35:06 2021 UTC (3 years, 2 months ago) by xiangcha
File length: 20219 byte(s)
Diff to previous 92525 
JIRA:GCOL-9667. Don't store %GC
Revision 92525 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Jan 26 20:20:41 2021 UTC (3 years, 2 months ago) by xiangcha
File length: 20306 byte(s)
Diff to previous 84983 
JIRA:GCOL-9667. Add more code for new stats %GC, GC counts and ATGC counts
Revision 84983 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Jan 4 19:50:34 2019 UTC (5 years, 3 months ago) by akimchi
File length: 20120 byte(s)
Diff to previous 84402 
add alternate-pseudohaplotype; alternate-haplotype will be kept for future; JIRA:ASM-1093
Revision 84402 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Nov 6 13:52:22 2018 UTC (5 years, 5 months ago) by akimchi
File length: 20082 byte(s)
Diff to previous 83780 
add alternate-haplotype of diploid; JIRA: GCOL-7598
Revision 83780 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Sep 18 12:07:17 2018 UTC (5 years, 7 months ago) by akimchi
File length: 19920 byte(s)
Diff to previous 73691 
Add unresolved-diploid; JIRA:GCOL-7701
Revision 73691 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Jul 20 14:23:26 2016 UTC (7 years, 9 months ago) by xiangcha
File length: 19809 byte(s)
Diff to previous 67672 
JIRA:GCOL-5874. Add new stats_cd for replicon without ordered scaffold
Revision 67672 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Jun 3 16:18:27 2015 UTC (8 years, 10 months ago) by smithrg
File length: 19710 byte(s)
Diff to previous 64112 
JIRA: GCOL-3745 Add in codes of stats calculated on the fly for stats reports, so their numbers dont get used by anything else.
Revision 64112 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Aug 19 18:47:20 2014 UTC (9 years, 8 months ago) by smithrg
File length: 19513 byte(s)
Diff to previous 62873 
JIRA: GCOL-3081 Add release-level 'minor'
Revision 62873 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed May 14 12:35:05 2014 UTC (9 years, 11 months ago) by smithrg
File length: 19495 byte(s)
Diff to previous 57395 
JIRA: GCOL-2904 add 'withdrawn' to list of release-status'es.
Revision 57395 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Mar 4 19:15:51 2013 UTC (11 years, 1 month ago) by gouriano
File length: 19471 byte(s)
Diff to previous 57199 
Added PUBLIC_ASN_SPEC property. JIRA: CXX-3872
Revision 57199 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Feb 14 16:11:34 2013 UTC (11 years, 2 months ago) by smithrg
File length: 19471 byte(s)
Diff to previous 54405 
Add count-real-scaffolds (112) to statistics categories.
JIRA: ASM-295
Revision 54405 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri May 11 18:52:22 2012 UTC (11 years, 11 months ago) by smithrg
File length: 19388 byte(s)
Diff to previous 54398 
Change type long-name and submitter-organization to UTF8String.
Revision 54398 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri May 11 13:49:41 2012 UTC (11 years, 11 months ago) by xiangcha
File length: 19395 byte(s)
Diff to previous 53452 
JIRA GCOL-1500, GCOL-1503. Add new stats code
Revision 53452 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Mar 19 15:45:17 2012 UTC (12 years, 1 month ago) by akimchi
File length: 18498 byte(s)
Diff to previous 52280 
add analysis set type of collection; JIRA:GCOL-1356
Revision 52280 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Dec 13 20:26:44 2011 UTC (12 years, 4 months ago) by smithrg
File length: 18413 byte(s)
Diff to previous 51066 
add new stat types net-count-scaffold|component. JIRA: GCOL-1360
Revision 51066 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Aug 30 18:20:21 2011 UTC (12 years, 7 months ago) by akimchi
File length: 18199 byte(s)
Diff to previous 50986 
update documentation;
Revision 50986 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Aug 22 17:59:17 2011 UTC (12 years, 8 months ago) by akimchi
File length: 18163 byte(s)
Diff to previous 50727 
add field for submitter of assembly; JIRA: GCOL-1221
Revision 50727 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Aug 2 17:42:01 2011 UTC (12 years, 8 months ago) by akimchi
File length: 18026 byte(s)
Diff to previous 50084 
export GC-SequenceRole needed by get_assemblystats; document. JIRA:GCOL-1210
Revision 50084 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Jun 15 13:10:31 2011 UTC (12 years, 10 months ago) by akimchi
File length: 17363 byte(s)
Diff to previous 49257 
GI needs to be optional since contigs will not have GIs soon;
Revision 49257 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Apr 11 02:19:03 2011 UTC (13 years ago) by akimchi
File length: 17307 byte(s)
Diff to previous 48956 
add roles for pseudo-scaffolds; JIRA: GCOL-1069
Revision 48956 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Mar 14 14:30:16 2011 UTC (13 years, 1 month ago) by akimchi
File length: 17114 byte(s)
Diff to previous 48954 
add HUP status of assembly - to be used only internally (such as producing ftp-file for submitter of HUPed genomes); JIRA: GCOL-1075
Revision 48954 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Mar 14 14:21:36 2011 UTC (13 years, 1 month ago) by akimchi
File length: 17096 byte(s)
Diff to previous 48373 
add suppressed status of assembly; JIRA: GCOL-1075
Revision 48373 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Jan 10 15:25:20 2011 UTC (13 years, 3 months ago) by fedorov
File length: 17005 byte(s)
Diff to previous 48266 
JIRA:GCOL-989 GC-SequenceRole added
Revision 48266 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Dec 29 16:32:39 2010 UTC (13 years, 3 months ago) by xiangcha
File length: 16608 byte(s)
Diff to previous 48264 
JIRA GCOL-850,JIRA GCOL-617. Add more code to statistics. Revert the bad commit which dropped the change from rev 204953
Revision 48264 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Dec 29 15:55:58 2010 UTC (13 years, 3 months ago) by xiangcha
File length: 16307 byte(s)
Diff to previous 47157 
JIRA GCOL-850, JIRA GCOL-617, add more code for new statistics
Revision 47157 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Sep 16 15:09:04 2010 UTC (13 years, 7 months ago) by dicuccio
File length: 16175 byte(s)
Diff to previous 47156 
Correct syntax errors.
Shift new optional element to the end of the structure
JIRA: GCOL-879
Revision 47156 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Sep 16 13:58:19 2010 UTC (13 years, 7 months ago) by akimchi
File length: 16174 byte(s)
Diff to previous 47113 
rename release-type as release-level and move to the assembly-desc section. JIRA:GCOL-879
Revision 47113 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Sep 13 18:35:06 2010 UTC (13 years, 7 months ago) by akimchi
File length: 16014 byte(s)
Diff to previous 47111 
add option to report list of assemblies by criteria; JIRA: GCOL-434
Revision 47111 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Sep 13 18:13:08 2010 UTC (13 years, 7 months ago) by xiangcha
File length: 15711 byte(s)
Diff to previous 47110 
JIRA GCOL-617: support compound assembly stats
Revision 47110 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Sep 13 18:07:58 2010 UTC (13 years, 7 months ago) by xiangcha
File length: 15710 byte(s)
Diff to previous 47109 
JIRA GCOL-617: add support for stats of compound assembly
Revision 47109 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Sep 13 17:31:54 2010 UTC (13 years, 7 months ago) by dicuccio
File length: 15254 byte(s)
Diff to previous 46639 
Add new optional elements for release type and patch-type markup
Revision 46639 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Jul 28 12:34:41 2010 UTC (13 years, 9 months ago) by dicuccio
File length: 15016 byte(s)
Diff to previous 46548 
Fix circular CRef<> relationship induced by indexing
JIRA: GCOL-840
Revision 46548 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Jul 19 15:47:45 2010 UTC (13 years, 9 months ago) by fedorov
File length: 15016 byte(s)
Diff to previous 46547 
Small fix related to merge issues
Revision 46547 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Mon Jul 19 15:06:05 2010 UTC (13 years, 9 months ago) by fedorov
File length: 15016 byte(s)
Diff to previous 46527 
JIRA:GCOL-565
Revision 46527 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Jul 15 21:34:17 2010 UTC (13 years, 9 months ago) by xiangcha
File length: 13999 byte(s)
Diff to previous 46237 
JIRA GCOL-675: remove redundant stats
Revision 46237 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Tue Jun 22 13:59:36 2010 UTC (13 years, 10 months ago) by sapojnik
File length: 14526 byte(s)
Diff to previous 46199 
typos fixed (one in field name, one in comment)
Revision 46199 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Fri Jun 18 13:55:18 2010 UTC (13 years, 10 months ago) by dicuccio
File length: 14526 byte(s)
Diff to previous 45932 
Drop unused legacy portions of the GenColl ASN spec
Revision 45932 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Jun 2 13:55:25 2010 UTC (13 years, 10 months ago) by dicuccio
File length: 15538 byte(s)
Diff to previous 45164 
Merge new genome collection ASN spec to trunk
Revision 45164 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Thu Mar 18 16:30:03 2010 UTC (14 years, 1 month ago) by joukovv
File length: 7463 byte(s)
Diff to previous 42851 
Made conformant to formal ASN.1 spec - EXPORTS before IMPORTS.
Revision 42851 - (view) (download) (as text) (annotate) - [select for diffs]
Modified Wed Aug 19 13:13:41 2009 UTC (14 years, 8 months ago) by akimchi
File length: 7463 byte(s)
Diff to previous 42317 
Document the dbtags used, so programmers know what to expect to see in this field
Revision 42317 - (view) (download) (as text) (annotate) - [select for diffs]
Added Fri Jun 26 14:32:57 2009 UTC (14 years, 10 months ago) by dicuccio
File length: 7213 byte(s) 
Merge internal/gpipe/objects/genomecoll -> objects/genomecoll

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