Parent Directory
| 
Revision Log
| Links to HEAD: | (view) (download) (as text) (annotate) |
| Sticky Revision: |
set PUBLIC_ASN_SPEC property
JIRA:SASN-18 Added nomenclature (39) to OrgMod.subtype
JIRA:SQD-4001 comitted svn propset PUBLIC_ASN_SPEC for propeptide addition
JIRA:SQD-4001 Added Prot-ref.processed.propeptide
setting PUBLIC_ASN_SPEC property
JIRA:GB-3712 Added BioSource.genome plasmid-in-mitochondrion and plasmid-in-plastid choices
set PUBLIC_ASN_SPEC propset for OrgMod type-material
JIRA:SQD-1327 Added OrgMod type-material 38
JIRA:SQD-734 set PUBLIC_ASN_SPEC propset for new altitude subsource choice
JIRA:SQD-734 Added SubSource altitude (43) legal October 15
added PUBLIC_ASN_SPEC
JIRA:CXX-2778 added VariantProperties.allele-origin.not-reported, by request
Made public
Modifed Clone-Ref to provide addtional information about clone placements JIRA CL-548
Set PUBLIC_ASN_SPEC
Expand VariantProperties - add fields from Variation-ref Deprecate duplicated fields (by comment and in C++)
Bump piblic
Tune comment JIRA: VAR-9
Set PUBLIC flag
Move assertion/reference/variant tags to Variation-inst.observation JIRA: VAR-9
Set public ASN spec
Implement mark-up for variant packages JIRA: VAR-9
Population-data.flags should be optional
Add 'drug-response' and 'histocompatibility' to 'clinical-significance' Add allele frequency, bitset for flags to PopulationData Update comment for 'validated' bit in VariantProperties Update comment for Variation-ref.allele-frequency
set PUBLIC_ASN_SPEC propset for SeqFeatSupport addition
added SeqFeatSupport to replace /experiment, /inference, and model-evidence user object
Update PUBLIC_ASN_SPEC JIRA: SNPD-392
Add stop-gain, stop-loss to effect bitfield JIRA: SNPD-392
Export NCBI-BioSource.SubSource and import it into NCBI-Variation for the sake of Variation-ref.somatic-origin.
Make allele-origin an explicit bitfield Add Variation-ref.somatic-origin Add new subsource type: phenotype
Bump PUBLIC_ASN_SPEC
Tune the warning comment a bit JIRA: STV-701
Suppress VariantProperties.project-data. Clients can still inquire whether the field is set and reset the field to an unset state, but access to the field is prohibited. JIRA: STV-701
Update PUBLIC_ASN_SPEC
Simplify project-data JIRA: STV-657, ID-507
added subsource whole-replicon - to be introduced in INSD records on October 15 release - set PUBLIC_ASN_SPEC propset
added subsource whole-replicon - to be introduced in INSD records on October 15 release
Public ASN spec bump JIRA: GBW-113, GBW-114
Add new Variation-inst.data type (complex). Add APIs to create empty insertions, CNVs of type gain or loss, and complext variations JIRA: GBW-113
PUBLIC_ASN_SPEC to rev.198047 JIRA: STV-292
Add optical-mapping method JIRA: STV-608
Updated PUBLIC_ASN_SPEC marker
Multiple Variation-ref spec updates in preparation for commencement of submission - snp -> snv - VariantProperties: split gene-function into gene-location and effect - VariantProperties: abandon hapmap fields, introduce more flexible project binding - Delta-item: 'seq' is OPTIONAL - update Variation-inst comments JIRA: STV-292
Add new type for variation set (genotype, separating previous 'alleles' into 'alleles' and 'genotype') Add default 'action' to Delta-item indicating how the change should be interpreted (default = replace) JIRA: STV-292
JIRA:TM-130 made OrgMod.pgcode public
JIRA:TM-130 added pgcode to OrgMod based on organism with chloroplast using genetic code 4
Spec updates to accomodate changes from dbVar meeting JIRA: STV-292
PUBLIC_ASN_SPEC to r189004
Tune ASN.1 spec for compliance with C toolkit JIRA: STV-292
ENUMERATED -> INTEGER JIRA: STV-292
Implement new Seq-feat data subtype (Variation-ref) JIRA: STV-292
set public spec property to include clone-feat definition
Add Clone-ref seq-feat subtype JIRA: GP-434
set public asn spec after changing gene nomenclature source from visible string to Dbtag
changed gene nomenclature source from visible string to Dbtag
set public spec property after adding Gene-nomenclature
added Gene-nomenclature
set PUBLIC_ASN_SPEC for recent addition of RNA-gen extension
added specific choices for ncRNA, tmRNA, miscRNA, added ext choice RNA-gen
set PUBLIC_ASN_SPEC property
removed placement from subsource
set PUBLIC_ASN_SPEC property
added pcr-primers field to BioSource - for future use
set PUBLIC_ASN_SPEC property
changed subsource placed to placement
set public property after checkin of haplogroup and placed
added haplogroup and placed subsources
set public property after checkin of mating-type and linkage-group
added mating-type and linkage-group
added chromatophore
added chromatophore
recommit after setting PUBLIC_ASN_SPEC
added metagenome-source
set PUBLIC_ASN_SPEC property
added culture-collection and bio-material to OrgMod.subtype
Set PUBLIC_ASN_SPEC property"
added metagenomic subsource
Added chromosome as a biomol type
added hydrogenosome
Added optional set of IDs and set of ext objects (will replace single id and single ext in the future)
added nitrosylation as enumerated choice to SeqFeatData.site
changed [left/right]-primer to [fwd/rev]-primer-[seq/name]
added lat-lon through right-primer SubSource qualifiers for Barcode of Life project
added gb-acronym, gb-anamorph, and gb-synonym as orgmods for taxonomy database use
added locus-tag to Gene-ref as OPTIONAL field
added transgenic, environmental-sample, and isolation-source to SubSource.subtype
Fixed typo in comment "corresspond->correspond"
added snoRNA to MolInfo and RNA-ref, fixed typos in comments, changed tabs to spaces for better readability
changed "county" to "country"
year 2000 updates.. all adding values to INTEGER or ENNUMERATED types
changed protoplast to proplastid
added nucleomorph apiocoplast leucoplast protoplast
Revision changed to 6.0
Version 6 of ASN.1
fix nits caught by snacc
Set to revision 5.0
added virion, signal-peptide, transit-peptide, division
added comment about OrgMod.subtype = old-name (254)
force to ASN.1 release 4.0
EXPORTED Genetic-code
add dbxref to Seq-feat add anticodon to tRNA-ext
added lineage and genetic codes to Org-name
added sub-species
added proviral and cyanelle to Biosource.genome changed SubSource (11) to clone-lib and SubSource (18) to tissue-lib
made OrgName.name OPTIONAL
added comments
update to asn3.0
setting to release 2.0
Code-table to Genetic-code-table
made Seq-feat.xref OPTIONAL
added SeqFeatXref
many fixes for code lockdown
fixed up alphabets in tRNA
fixed genetic code and code break
added exp type 10 to TxInit
extended sites for SWISSPROT
remove version from header
added syn to Org-ref
Gene-ref.syn made optional
added synonyms to Gene-ref
minor change to rsite-ref
move CdRegion.stops to end to avoid corrupting old data
added "stops" to CdRegion
Txinit.pm-seq changed to Txinit.pe-seq (misspelling only)
*** empty log message ***
Initial revision
This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, enter a numeric revision.
| NCBI Systems Team">NCBI Systems Team | ViewVC Help |
| Powered by ViewVC 1.1.20 |